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Vasily Studitsky

Email
Center AffiliationsCancer Epigenetics

Publications (46) (print view)

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Chang HW, Hsieh FK, Patel SS, Studitsky VM. Time-resolved analysis of transcription through chromatin. Methods (San Diego, Calif). 2019 Apr 15;159-160:90-5.   PMCID: PMC6589111
Chang HW, Nizovtseva EV, Razin SV, Formosa T, Gurova KV, Studitsky VM. Histone Chaperone FACT and Curaxins: Effects on Genome Structure and Function. Journal of cancer metastasis and treatment. 2019 Jan;5.   PMCID: PMC6919649
Kantidze OL, Gurova KV, Studitsky VM, Razin SV. The 3D Genome as a Target for Anticancer Therapy. Trends in Molecular Medicine. 2019 Oct 31;.
Kantidze OL, Luzhin AV, Nizovtseva EV, Safina A, Valieva ME, Golov AK, Velichko AK, Lyubitelev AV, Feofanov AV, Gurova KV, Studitsky VM, Razin SV. The anti-cancer drugs curaxins target spatial genome organization. Nat Commun. 2019 Mar 29;10(1):1441.   PMCID: PMC6441033
Malyuchenko NV, Kotova EY, Kirpichnikov MP, Studitsky VM, Feofanov AV. PARP1 Binding to DNA Breaks and Hairpins Alters Nucleosome Structure. Moscow University Biological Sciences Bulletin. 2019 Jan;74(3):158-62.
Nizovtseva EV, Polikanov YS, Kulaeva OI, Clauvelin N, Postnikov YV, Olson WK, Studitsky VM. [Opposite Effects of Histone H1 and HMGN5 Protein on Distant Interactions in Chromatin]. Mol Biol (Mosk). 2019 Nov;53(6):1038-48.   PMCID: PMC6934096
Chang HW, Valieva ME, Safina A, Chereji RV, Wang J, Kulaeva OI, Morozov AV, Kirpichnikov MP, Feofanov AV, Gurova KV, Studitsky VM. Mechanism of FACT removal from transcribed genes by anticancer drugs curaxins. Science advances. 2018 Nov;4(11):eaav2131.   PMCID: PMC6221510
Feofanov AV, Andreeva TV, Studitsky VM, Kirpichnikov MP. Reversibility of Structural Rearrangements in Mononucleosomes Induced by Ionic Strength. Moscow University Biological Sciences Bulletin. 2018 Jan;73(3):157-61.
Gerasimov E, Gerasimova N, Studitsky V. Yeast protein Nhp6A binds to short GC-rich genes. Febs Open Bio. 2018 Jul;8(2):145.
Gurova K, Chang HW, Valieva ME, Sandlesh P, Studitsky VM. Structure and function of the histone chaperone FACT - Resolving FACTual issues. Biochim Biophys Acta Gene Regul Mech. 2018 Jul 25;.   PMCID: PMC6349528
Kozlova AL, Valieva ME, Maluchenko NV, Studitsky VM. [HMGB Proteins as DNA Chaperones That Modulate Chromatin Activity]. Mol Biol (Mosk). 2018 Sep;52(5):737-49.
Kozlova AL, Valieva ME, Maluchenko NV, Studitsky VM. HMGB Proteins as DNA Chaperones That Modulate Chromatin Activity. Molecular Biology. 2018 Jan;52(5):637-47.
McCullough LL, Connell Z, Xin H, Studitsky VM, Feofanov AV, Valieva ME, Formosa T. Functional roles of the DNA-binding HMGB domain in the histone chaperone FACT in nucleosome reorganization. The Journal of biological chemistry. 2018 Apr 20;293(16):6121-33.   PMCID: PMC5912460
Shaytan AK, Xiao H, Armeev GA, Gaykalova DA, Komarova GA, Wu C, Studitsky VM, Landsman D, Panchenko AR. Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID. Nature protocols. 2018 Nov;13(11):2535-56.   PMCID: PMC6322412
Chang HW, Studitsky VM. Chromatin replication: TRANSmitting the histone code. Journal of nature and science. 2017 Feb;3(2).   PMCID: PMC5384335
Hsieh FK, Kozlova AL, Gerasimova NS, Kotova EY, Formosa T, Studitsky VM. Role of the Nhp6 Protein in In Vitro Transcription through the Nucleosome. Moscow University Biological Sciences Bulletin. 2017 Oct;72(4):218-21.
Karlova MG, Volokh OI, Chertkov OV, Kirpichnikov MP, Studitsky VM, Sokolova OS. Purification and concentration of RNA polymerase on Ni-lipid monolayers. Russian Journal of Bioorganic Chemistry. 2017 Nov;43(6):658-63.
Lyubitelev AV, Studitsky VM, Feofanov AV, Kirpichnikov MP. Effect of sodium and potassium ions on conformation of linker parts of nucleosomes. Moscow University Biological Sciences Bulletin. 2017 Jul;72(3):146-50.
Nizovtseva EV, Clauvelin N, Todolli S, Polikanov YS, Kulaeva OI, Wengrzynek S, Olson WK, Studitsky VM. Nucleosome-free DNA regions differentially affect distant communication in chromatin. Nucleic acids research. 2017 Apr;45(6):3059-67.
Nizovtseva EV, Clauvelin N, Todolli S, Polikanov YS, Kulaeva OI, Wengrzynek S, Olson WK, Studitsky VM. Nucleosome-free DNA regions differentially affect distant communication in chromatin. Nucleic acids research. 2017 Dec 09;45(6):3059-67.   PMCID: PMC5389534
Nizovtseva EV, Todolli S, Olson WK, Studitsky VM. Towards quantitative analysis of gene regulation by enhancers. Epigenomics. 2017 Sep;9(9):1219-31.   PMCID: PMC5585842
Sultanov DC, Gerasimova NS, Kudryashova KS, Maluchenko NV, Kotova EY, Langelier MF, Pascal JM, Kirpichnikov MP, Feofanov AV, Studitsky VM. Unfolding of core nucleosomes by PARP-1 revealed by spFRET microscopy. AIMS genetics. 2017 Jan;4(1):21-31.   PMCID: PMC5552189
Valieva ME, Gerasimova NS, Kudryashova KS, Kozlova AL, Kirpichnikov MP, Hu Q, Botuyan MV, Mer G, Feofanov AV, Studitsky VM. Stabilization of Nucleosomes by Histone Tails and by FACT Revealed by spFRET Microscopy. Cancers. 2017 Jan 06;9(1).
Valieva ME, Gerasimova NS, Kudryashova KS, Kozlova AL, Kirpichnikov MP, Hu Q, Botuyan MV, Mer G, Feofanov AV, Studitsky VM. Stabilization of Nucleosomes by Histone Tails and by FACT Revealed by spFRET Microscopy. Cancers. 2017 Jan 06;9(1).   PMCID: PMC5295774
Chang HW, Pandey M, Kulaeva OI, Patel SS, Studitsky VM. Overcoming a nucleosomal barrier to replication. Science advances. 2016 Nov;2(11):e1601865.   PMCID: PMC5106197
Gerasimova NS, Pestov NA, Kulaeva OI, Clark DJ, Studitsky VM. Transcription-induced DNA supercoiling: New roles of intranucleosomal DNA loops in DNA repair and transcription. Transcription. 2016 May 26;7(3):91-5.   PMCID: PMC4984681
Gerasimova NS, Studitsky VM. Hydroxyl radical footprinting of fluorescently labeled DNA. Moscow University Biological Sciences Bulletin. 2016 Apr;71(2):93-6.
Gross S, Kotova EY, Maluchenko NV, Pascal JM, Studitsky VM. Evaluating Parp1 domains as gossypol targets. Moscow University Biological Sciences Bulletin. 2016 Jan;71(4):235-9.
Gross S, Kotova EY, Maluchenko NV, Pascal JM, Studitsky VM. Evaluating Parp1 domains as gossypol targets. Moscow University Biological Sciences Bulletin. 2016 Jan;71(4):235-9.
Lyubitelev AV, Nikitin DV, Shaytan AK, Studitsky VM, Kirpichnikov MP. Structure and Functions of Linker Histones. Biochemistry (Mosc). 2016 Mar;81(3):213-23.
Maluchenko NV, Chang HW, Kozinova MT, Valieva ME, Gerasimova NS, Kitashov AV, Kirpichnikov MP, Georgiev PG, Studitsky VM. [Inhibiting the pro-tumor and transcription factor FACT: Mechanisms]. Mol Biol (Mosk). 2016 Jul;50(4):599-610.
Maluchenko NV, Chang HW, Kozinova MT, Valieva ME, Gerasimova NS, Kitashov AV, Kirpichnikov MP, Georgiev PG, Studitsky VM. [Inhibiting the pro-tumor and transcription factor FACT: Mechanisms]. Mol Biol (Mosk). 2016 Jul;50(4):599-610.
Studitsky VM, Nizovtseva EV, Shaytan AK, Luse DS. Nucleosomal Barrier to Transcription: Structural Determinants and Changes in Chromatin Structure. Biochemistry & molecular biology journal. 2016 Jan;2(2).   PMCID: PMC5041593
Valieva ME, Armeev GA, Kudryashova KS, Gerasimova NS, Shaytan AK, Kulaeva OI, McCullough LL, Formosa T, Georgiev PG, Kirpichnikov MP, Studitsky VM, Feofanov AV. Large-scale ATP-independent nucleosome unfolding by a histone chaperone. Nature structural & molecular biology. 2016 Dec;23(12):1111-6.
Valieva ME, Feofanov AV, Studitsky VM. Histone chaperones: Variety and functions. Moscow University Biological Sciences Bulletin. 2016 Jan;71(3):165-9.
Volokh OI, Derkacheva NI, Studitsky VM, Sokolova OS. [Structural studies of chromatin remodeling factors]. Mol Biol (Mosk). 2016 Nov;50(6):922-34.
Volokh OI, Derkacheva NI, Studitsky VM, Sokolova OS. Structural studies of chromatin remodeling factors. Molecular Biology. 2016 Nov;50(6):812-22.
Volokh OI, Hsieh FK, Karlova MG, Trifonova ES, Studitsky VM, Sokolova OS. Study of RNA polymerase transcription through nucleosome using the cryo-electron microscopy approach. Moscow University Biological Sciences Bulletin. 2016 Jan;71(1):34-8.
Clauvelin N, Lo P, Kulaeva OI, Nizovtseva EV, Diaz-Montes J, Zola J, Parashar M, Studitsky VM, Olson WK. Nucleosome positioning and composition modulate in silico chromatin flexibility. J Phys Condens Matter. 2015 Feb 18;27(6):064112.   PMCID: 4492108
Feofanov AV, Kudryashova KS, Chertkov OV, Nikitin DV, Pestov NA, Kulaeva OI, Studitsky VM, Kirpichnikov MP. Analysis of nucleosome transcription using single-particle FRET. Springer Proceedings in Physics. 2015 Jan;164:255-60.
Gaykalova DA, Kulaeva OI, Volokh O, Shaytan AK, Hsieh FK, Kirpichnikov MP, Sokolova OS, Studitsky VM. Structural analysis of nucleosomal barrier to transcription. Proc Natl Acad Sci U S A. 2015 Oct 27;112(43):E5787-95.   PMCID: 4629332
Hsieh FK, Kulaeva OI, Studitsky VM. Experimental Analysis of hFACT Action During Pol II Transcription In Vitro. Methods Mol Biol. 2015 Jan;1276:315-26.
Kudryashova KS, Nikitin DV, Chertkov OV, Gerasimova NS, Valieva ME, Studitsky VM, Feofanov AV. Development of fluorescently labeled mononucleosomes for the investigation of transcription mechanisms by single complex microscopy. Moscow University Biological Sciences Bulletin. 2015 Jan;70(4):189-93.
Kulaeva OI, Studitsky VM. Preparation and analysis of positioned mononucleosomes. Methods Mol Biol. 2015 Jan;1288:15-26.
Maluchenko NV, Kulaeva OI, Kotova EY, Chupyrkina AA, Nikitin DV, Kirpichnikov MP, Studitsky VM. Molecular mechanisms of transcriptional regulation by Poly(ADP-ribose) polymerase 1. Molecular Biology. 2015 Jan;49(1):86-98.
Pestov NA, Gerasimova NS, Kulaeva OI, Studitsky VM. Structure of transcribed chromatin is a sensor of DNA damage. Science advances. 2015 Jul;1(6):e1500021.   PMCID: PMC4646769
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Last updated on Friday, January 03, 2020