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Richard Katz

Email
Center AffiliationsCancer Epigenetics

Publications (53) (print view)

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Mancuso P, Tricarico R, Bhattacharjee V, Cosentino L, Kadariya Y, Jelinek J, Nicolas E, Einarson M, Beeharry N, Devarajan K, Katz RA, Dorjsuren DG, Sun H, Simeonov A, Giordano A, Testa JR, Davidson G, Davidson I, Larue L, Sobol RW, Yen TJ, Bellacosa A. Thymine DNA glycosylase as a novel target for melanoma. Oncogene. 2019 May;38(19):3710-28.   PMCID: PMC6563616
Jiang P, Li Y, Poleshko A, Medvedeva V, Baulina N, Zhang Y, Zhou Y, Slater CM, Pellegrin T, Wasserman J, Lindy M, Efimov A, Daly M, Katz RA, Chen X. The Protein Encoded by the CCDC170 Breast Cancer Gene Functions to Organize the Golgi-Microtubule Network. EBioMedicine. 2017 Jun 27;22:28-43.   PMCID: PMC5552109
Skalka AM, Andrake MD, Katz RA. Successes and challenges with retroviral enzymes. Postepy biochemii. 2016 Jan;62(3):280-5.
Skalka AM, Andrake MD, Katz RA. Successes and challenges with retroviral enzymes. Postepy biochemii. 2016 Jan;62(3):280-5.
Peretz Y, Wu H, Patel S, Bellacosa A, Katz RA. Inhibitor of DNA Binding 4 (ID4) Is Highly Expressed in Human Melanoma Tissues and May Function to Restrict Normal Differentiation of Melanoma Cells. PLoS One. 2015 Jan;10(2):e0116839.   PMCID: Pmc4314081
Haugh KA, Shalginskikh N, Nogusa S, Skalka AM, Katz RA, Balachandran S. The interferon-inducible antiviral protein Daxx is not essential for interferon-mediated protection against avian sarcoma virus. Virol J. 2014 Jan;11(1):100.   PMCID: Pmc4049388
Poleshko A, Katz RA. Specifying peripheral heterochromatin during nuclear lamina reassembly. Nucleus-Austin. 2014 Jan;5(1):32-9.   PMCID: PMC4028353
Poleshko A, Kossenkov AV, Shalginskikh N, Pecherskaya A, Einarson MB, Marie Skalka A, Katz RA. Human factors and pathways essential for mediating epigenetic gene silencing. Epigenetics. 2014 Sep;9(9):1280-9.   PMCID: Pmc4169020
Poleshko A, Mansfield KM, Burlingame CC, Andrake MD, Shah NR, Katz RA. The human protein PRR14 tethers heterochromatin to the nuclear lamina during interphase and mitotic exit. Cell Rep. 2013 Oct 31;5(2):292-301.   PMCID: PMC3867587
Shalginskikh N, Poleshko A, Skalka AM, Katz RA. Retroviral DNA methylation and epigenetic repression are mediated by the antiviral host protein daxx. J Virol. 2013 Feb;87(4):2137-50.   PMCID: PMC3571491
Katz RA, Merkel G, Andrake MD, Roder H, Skalka AM. Retroviral Integrases Promote Fraying of Viral DNA Ends. Journal of Biological Chemistry. 2011 Jul;286(29):25710-8.   PMCID: PMC3138259
Poleshko A, Einarson MB, Shalginskikh N, Zhang R, Adams PD, Skalka AM, Katz RA. Identification of a functional network of human epigenetic silencing factors. The Journal of biological chemistry. 2010 Jan;285(1):422-33.   PMCID: PMC2804189
Frescas D, Guardavaccaro D, Kuchay SM, Kato H, Poleshko A, Basrur V, Elenitoba-Johnson KS, Katz RA, Pagano M. KDM2A represses transcription of centromeric satellite repeats and maintains the heterochromatic state. Cell cycle (Georgetown, Tex). 2008 Nov;7(22):3539-47.
Poleshko A, Palagin I, Zhang R, Boimel P, Castagna C, Adams PD, Skalka AM, Katz RA. Identification of cellular proteins that maintain retroviral epigenetic silencing: evidence for an antiviral response. J Virol. 2008 Mar;82(5):2313-23.   PMCID: PMC2258957
Katz RA, Jack-Scott E, Narezkina A, Palagin I, Boimel P, Kulkosky J, Nicolas E, Greger JG, Skalka AM. High Frequency Epigenetic Repression and Silencing of Retroviruses can be Antagonized by HDAC Inhibitors and Transcriptional Activators, but Uniform Reactivation in Cell Clones is Restricted by Additional Mechanisms. J Virol. 2007 Jan 03;81(6):2592-604.
Greger JG, Katz RA, Ishov AM, Maul GG, Skalka AM. The cellular protein Daxx interacts with avian sarcoma virus integrase and viral DNA to repress viral transcription. Journal of Virology. 2005 Apr;79(8):4610-8.
Katz RA, Greger JG, Skalka AM. Effects of cell cycle status on early events in retroviral replication. Journal of cellular biochemistry. 2005 Apr;94(5):880-9.
Skalka AM, Katz RA. Retroviral DNA integration and the DNA damage response. Cell death and differentiation. 2005 Jan;12(S1):971-8.
Daniel R, Greger JG, Katz RA, Taganov KD, Wu X, Kappes JC, Skalka AM. Evidence that stable retroviral transduction and cell survival following DNA integration depend on components of the nonhomologous end joining repair pathway. Journal of Virology. 2004 Aug;78(16):8573-81.
Daniel R, Ramcharan J, Rogakou E, Taganov KD, Greger JG, Bonner W, Nussenzweig A, Katz RA, Skalka AM. Histone H2AX is phosphorylated at sites of retroviral DNA integration but is dispensable for postintegration repair. Journal of Biological Chemistry. 2004 Oct 29;279(44):45810-4.
Greger JG, Katz RA, Taganov K, Rall GF, Skalka AM. Transduction of terminally differentiated neurons by avian sarcoma virus. Journal of Virology. 2004 May;78(9):4902-6.
Narezkina A, Taganov KD, Litwin S, Stoyanova R, Hayashi J, Seeger C, Skalka AM, Katz RA. Genome-wide analyses of avian sarcoma virus integration sites. Journal of Virology. 2004 Nov;78(21):11656-63.
Taganov KD, Cuesta I, Daniel R, Cirillo LA, Katz RA, Zaret KS, Skalka AM. Integrase-specific enhancement and suppression of retroviral DNA integration by compacted chromatin structure in vitro. Journal of Virology. 2004 Jun;78(11):5848-55.
Daniel R, Kao G, Taganov K, Greger JG, Favorova O, Merkel G, Yen TJ, Katz RA, Skalka AM. Evidence that the retroviral DNA integration process triggers an ATR- dependent DNA damage response. Proceedings of the National Academy of Sciences of the United States of America. 2003 Apr 15;100(8):4778-83.
Katz RA, Greger JG, Boimel P, Skalka AM. Human immunodeficiency virus type 1 DNA nuclear import and integration are mitosis independent in cycling cells. Journal of Virology. 2003 Dec;77(24):13412-7.
Katz RA. Retroviruses. In: Creighton T, editor. Wiley encyclopedia of molecular medicine. New York: John Wiley; 2002. p. 5 v (xxix, 3699 p).
Katz RA, Greger JG, Darby K, Boimel P, Rall GF, Skalka AM. Transduction of interphase cells by avian sarcoma virus. J Virol. 2002 Jun;76(11):5422-34.
Daniel R, Katz RA, Merkel G, Hittle JC, Yen TJ, Skalka AM. Wortmannin potentiates integrase-mediated killing of lymphocytes and reduces the efficiency of stable transduction by retroviruses. Mol Cell Biol. 2001 Feb;21(4):1164-72.
Daniel R, Litwin S, Katz RA, Skalka AM. Computational analysis of retrovirus-induced scid cell death. J Virol. 2001 Apr;75(7):3121-8.
Katz RA, DiCandeloro P, Kukolj G, Skalka AM. Role of DNA end distortion in catalysis by avian sarcoma virus integrase. The Journal of biological chemistry. 2001 Sep 07;276(36):34213-20.
Taganov K, Daniel R, Katz RA, Favorova O, Skalka AM. Characterization of retrovirus-host DNA junctions in cells deficient in nonhomologous-end joining. J Virol. 2001 Oct;75(19):9549-52.
Skalka AM, Katz RA, Daniel R. Assays and novel cellular targets for therapeutic agents to treat retroviral infection. 2000 Sep 21;:41 pp.
Daniel R, Katz RA, Skalka AM. A role for DNA-PK in retroviral DNA integration. Science (New York, NY). 1999 Apr 23;284(5414):644-7.
Katzman M, Katz RA. Substrate recognition by retroviral integrases. In: Advances in Virus Research, Vol 52. 1999. p. 371-95.
Bouck J, Fu XD, Skalka AM, Katz RA. Role of the constitutive splicing factors U2AF(65) and SAP49 in suboptimal RNA splicing of novel retroviral mutants. Journal of Biological Chemistry. 1998 Jun 12;273(24):15169-76.
Bouck J, Litwin S, Skalka AM, Katz RA. In vivo selection for intronic splicing signals from a randomized pool. Nucleic acids research. 1998 Oct;26(19):4516-23.
Katz RA, Gravuer K, Skalka AM. A preferred target DNA structure for retroviral integrase in vitro. Journal of Biological Chemistry. 1998 Sep 11;273(37):24190-5.
Kukolj G, Katz RA, Skalka AM. Characterization of the nuclear localization signal in the avian sarcoma virus integrase. Gene. 1998 Nov 26;223(1-2):157-63.
Lubkowski J, Yang F, Alexandratos J, Merkel G, Katz RA, Gravuer K, Skalka AM, Wlodawer A. Structural basis for inactivating mutations and pH-dependent activity of avian sarcoma virus integrase. Journal of Biological Chemistry. 1998 Dec 04;273(49):32685-9.
Bujacz G, Jaskolski M, Alexandratos J, Wlodawer A, Merkel G, Katz RA, Skalka AM. The catalytic domain of avian sarcoma virus integrase: Conformation of the active-site residues in the presence of divalent cations. Structure (London, England : 1993). 1996 Jan 15;4(1):89-96.
Katz RA, Merkel G, Skalka AM. Targeting of retroviral integrase by fusion to a heterologous DNA binding domain: In vitro activities and incorporation of a fusion protein into viral particles. Virology. 1996 Mar;217(1):178-90.
Bujacz G, Jaskoski M, Alexandratos J, Wlodawer A, Merkel G, Katz RA, Skalka AM. High-Resolution Structure of the Catalytic Domain of Avian- Sarcoma Virus Integrase. Journal of Molecular Biology. 1995 Oct 20;253(2):333-46.
Katz RA, Skalka AM. The Retroviral Enzymes. Annual Review of Biochemistry. 1994 Jan;63:133-73.
Katz RA, Mack JP, Merkel G, Kulkosky J, Zheng G, Leis J, Skalka AM. Requirement for a Conserved Serine in Both Processing and Joining Activities of Retroviral Integrase. Proceedings of the National Academy of Sciences of the United States of America. 1992 Aug;89(15):6741-5.
Kulkosky J, Jones KS, Katz RA, Mack JP, Skalka AM. Residues critical for retroviral integrative recombination in a region that is highly conserved among retroviral/retrotransposon integrases and bacterial insertion sequence transposases. Molecular and Cellular Biology. 1992 Jan;12(5):2331-8.
Fu XD, Katz RA, Skalka AM, Maniatis T. The Role of Branchpoint and 3'-Exon Sequences in the Control of Balanced Splicing of Avian Retrovirus Rna. Genes & development. 1991 Feb;5(2):211-20.
Khan E, Mack JP, Katz RA, Kulkosky J, Skalka AM. Retroviral Integrase Domains - DNA-Binding and the Recognition of Ltr Sequences. Nucleic acids research. 1991 Feb 25;19(4):851-60.
Kulkosky J, Jones K, Merkel G, Katz RA, Skalka AM. Retroviral DNA Integration. Journal of Acquired Immune Deficiency Syndromes and Human Retrovirology. 1991 Jan;4(3):307-8.
Katz RA, Merkel G, Kulkosky J, Leis J, Skalka AM. The Avian Retroviral in Protein Is Both Necessary and Sufficient for Integrative Recombination Invitro. Cell. 1990 Oct 05;63(1):87-95.
Katz RA, Skalka AM. Generation of Diversity in Retroviruses. Annual Review of Genetics. 1990 Jan;24:409-45.
Katz RA, Skalka AM. Control of Retroviral Rna Splicing through Maintenance of Suboptimal Processing Signals. Molecular and Cellular Biology. 1990 Feb;10(2):696-704.
Kulkosky J, Katz RA, Skalka AM. Terminal Nucleotides of the Preintegrative Linear Form of Hiv-1 DNA Deduced from the Sequence of Circular DNA Junctions. Journal of Acquired Immune Deficiency Syndromes and Human Retrovirology. 1990 Jan;3(9):852-8.
Katz RA, Jentoft JE. What Is the Role of the Cys-His Motif in Retroviral Nucleocapsid (Nc) Proteins. BioEssays : news and reviews in molecular, cellular and developmental biology. 1989 Dec;11(6):176-81.
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Last updated on Friday, December 06, 2019