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Publication Listing for the MeSH term Software. Found 25 abstracts

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Adolf-Bryfogle J, Kalyuzhniy O, Kubitz M, Weitzner BD, Hu X, Adachi Y, Schief WR, Dunbrack RL. RosettaAntibodyDesign (RAbD): A general framework for computational antibody design. PLoS computational biology. 2018 Apr 27;14(4):e1006112.   PMCID: PMC5942852
Katsura Y, Stanley CE, Kumar S, Nei M. The Reliability and Stability of an Inferred Phylogenetic Tree from Empirical Data. Molecular biology and evolution. 2017 Mar;34(3):718-23.
Kumar S, Konikoff C, Sanderford M, Liu L, Newfeld S, Ye J, Kulathinal RJ. FlyExpress 7: An Integrated Discovery Platform To Study Coexpressed Genes Using in Situ Hybridization Images in Drosophila. G3 (Bethesda, Md). 2017 Aug 07;7(8):2791-7.   PMCID: PMC5555482
Kumar S, Konikoff C, Sanderford M, Liu L, Newfeld S, Ye J, Kulathinal RJ. FlyExpress 7: An Integrated Discovery Platform To Study Coexpressed Genes Using in Situ Hybridization Images in Drosophila. G3 (Bethesda, Md). 2017 Aug 07;7(8):2791-7.   PMCID: PMC5555482
Kumar S, Stecher G, Suleski M, Hedges SB. TimeTree: A Resource for Timelines, Timetrees, and Divergence Times. Molecular biology and evolution. 2017 Jul;34(7):1812-9.
Modi V, Xu Q, Adhikari S, Dunbrack RL. Assessment of template-based modeling of protein structure in CASP11. Proteins. 2016 Sep;84 Suppl 1:200-20.   PMCID: PMC5030193
Murad FM, Banerjee S, Barth BA, Bhat YM, Chauhan SS, Gottlieb KT, Konda V, Maple JT, Pfau P, Pleskow D, Siddiqui UD, Tokar JL, Wang A, Rodriguez SA. Image management systems. Gastrointestinal endoscopy. 2014 Jan;79(1):15-22.
Vazquez Quino LA, Chen X, Fitzpatrick M, Shi C, Stathakis S, Gutierrez A, Esquivel C, Mavroidis P, Alkhatib H, Papanikolaou N. Patient specific pre-treatment QA verification using an EPID approach. Technol Cancer Res Treat. 2014 Feb;13(1):1-10.   PMCID: *
Alves C, Cheng H, Roder H, Taylor J. Intrinsic disorder and oligomerization of the hepatitis delta virus antigen. Virology. 2010 Nov 25;407(2):333-40.   PMCID: PMC2952689
Shapovalov MV, Canutescu AA, Dunbrack RL. BioDownloader: Bioinformatics downloads and updates in a few clicks. Bioinformatics (Oxford, England). 2007 May;23(11):1437-9.
Bidaut G, Manion FJ, Garcia C, Ochs MF. WaveRead: automatic measurement of relative gene expression levels from microarrays using wavelet analysis. Journal of Biomedical Informatics. 2006 Aug;39(4):379-88.
Dunbrack RL. Sequence comparison and protein structure prediction. Current opinion in structural biology. 2006 Jun;16(3):374-84.
Manne SL, Ostroff JS, Winkel G, Fox K, Grana G, Miller E, Ross S, Frazier T, Buyyounouski MK, Hanlon AL, Eisenberg DF, Horwitz EM, Feigenberg SJ, Uzzo RG, Pollack A, Morrow M, Chen JQ, Yager JD, Russo J, Bassi DE, Fu J, Lopez de Cicco R, Klein-Szanto AJ, Devlin J, Sherman E, Altomare DA, Vaslet CA, Skele KL, De Rienzo A, Devarajan K, Jhanwar SC, McClatchey AI, Kane AB, Testa JR, Murphy ME, Langer CJ, Mehta MP, Viterbo R, Greenberg RE, Al-Saleem T, Canutescu AA, Dunbrack RL, Serebriiskii IG, Fang R, Latypova E, Hopkins R, Vinson C, Joung JK, Golemis EA. Couple-focused group intervention for women with early stage breast cancer. . J Consult Clin Psychol. 2005 Sep 15;73(4):634-46.
Wang G, Dunbrack RL. PISCES: recent improvements to a PDB sequence culling server. Nucleic acids research. 2005 Jul;33(Web Server issue):W94-8.
Bidaut G, Ochs MF. ClutrFree: cluster tree visualization and interpretation. Bioinformatics (Oxford, England). 2004 Nov;20(16):2869-71.
Markham GD, Norrby PO, Bock CW. S-adenosylmethionine conformations in solution and in protein complexes: conformational influences of the sulfonium group. Biochemistry. 2002 Jun 18;41(24):7636-46.
Fischer D, Elofsson A, Rychlewski L, Pazos F, Valencia A, Rost B, Ortiz AR, Dunbrack RL. CAFASP2: the second critical assessment of fully automated structure prediction methods. Proteins. 2001 Jan;Suppl 5:171-83.
Grant JD, Broccoli D, Muquit M, Manion FJ, Tisdall J, Ochs MF. Telometric: a tool providing simplified, reproducible measurements of telomeric DNA from constant field agarose gels. Biotechniques. 2001 Dec;31(6):1314-6, 1318.
Patriotis PC, Querec TD, Gruver BN, Brown TR, Patriotis C. ArrayExplorer, a program in Visual Basic for robust and accurate filter cDNA array analysis. Biotechniques. 2001 Oct;31(4):862, 864, 866-8, 870, 872.
Sahoo T, Goenaga-Diaz E, Serebriiskii IG, Thomas JW, Kotova E, Cuellar JG, Peloquin JM, Golemis E, Beitinjaneh F, Green ED, Johnson EW, Marchuk DA. Computational and experimental analyses reveal previously undetected coding exons of the KRIT1 (CCM1) gene. Genomics. 2001 Jan;71(1):123-6.
The above publications are sorted by year, faculty last name, and first author. Click on any highlighted author listed to find all publications attributed to that individual. Click on the publication title to see the abstract. First authors who are faculty are highlighted like this. Last authors who are faculty are highlighted like this. Other authors who are faculty are highlighted like this.

MeSH cloud from publications including the MeSH term Software

Software methods genetics Computational Biology chemistry Algorithms Molecular Models metabolism Protein Conformation Computer Simulation Sequence Alignment US Gov't Support-PHS Amino Acid Sequence Protein Sequence Analysis Non-US Gov't Support User-Computer Interface DNA Sequence Analysis Molecular Sequence Data Computer Graphics Proteins Amino Acid Sequence Homology Drosophila melanogaster Oligonucleotide Array Sequence Analysis statistics & numerical data Internet Phylogeny Gene Expression Profiling Non-US Gov't Research Support Monte Carlo Method instrumentation dotplot gene regulation Secondary Protein Structure In Situ Hybridization image analysis Transcription Factors Genetic Models Conserved Sequence Protein Structural Homology Gene Expression Regulation intergenic regions Binding Sites Protein Databases Information Storage and Retrieval Insect Genome standards Protein Folding embryonic expression patterns Reproducibility of Results analysis Three-Dimensional Imaging NIH Research Support-Extramural Protein Interaction Domains and Motifs Radiosurgery Female Hdd 0 (Plasmids) Computer-Assisted Image Processing MHC class II beta chain genes Antineoplastic Agents Hipaa Telomere Health Care Quality Assurance 0 (Anticonvulsants) color Mac Saccharomyces cerevisiae Proto-Oncogene Proteins Hepatitis delta Antigens Biodiversity Audio Video Interleave database second Gb Complementary DNA Mutation Avi Biotechnology Cd Dtr National Television System Committee Alternative Splicing digital capture device Adult Species Specificity divergence time Adrenal Gland Neoplasms Ntsc Artificial Intelligence 0 (Proteins) high definition reliability Solutions Biomolecular Nuclear Magnetic Resonance Middle Aged hard disk drive surgery Genetic Variation Dvd Bayonet Neill-Concelman compact disc 80 and over Aged homology modeling Adrenal Cortex Hormones Complementarity Determining Regions Autoradiography Hepatitis Delta Virus Recombinant Fusion Proteins Casp blue red-green Protein Multimerization Png Seizures pathology Polyacrylamide Gel Electrophoresis EC 27137 (Proto-Oncogene Proteins c-raf) Two-Hybrid System Techniques stability X-Ray Crystallography S-video Sulfur Expressed Sequence Tags Nucleic Acid Repetitive Sequences Systems Integration Dvts Mammals Joint Photographic Experts Group Video Graphics Array standard definition computer program RESTA US Gov't Research Support-PHS Molecular Evolution Adenosine Triphosphate Macromolecular Systems Information Systems serial digital interface subtrees Palliative Care personal computer S-Adenosylmethionine S-Adenosylhomocysteine therapy DNA-Binding Proteins Intensity-Modulated Radiotherapy Reverse Transcriptase Polymerase Chain Reaction etiology Tga Universal Serial Bus Circular Dichroism Treatment Outcome
Last updated on Tuesday, December 04, 2018