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Publication Listing for the MeSH term Proteins. Found 62 abstracts

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Haldane A, Levy RM. Influence of multiple-sequence-alignment depth on Potts statistical models of protein covariation. Physical review E. 2019 Mar;99(3-1):032405.   PMCID: PMC6508952
Shapovalov M, Vucetic S, Dunbrack RL. A new clustering and nomenclature for beta turns derived from high-resolution protein structures. PLoS computational biology. 2019 Mar;15(3):e1006844.   PMCID: PMC6424458
Wodak SJ, Paci E, Dokholyan NV, Berezovsky IN, Horovitz A, Li J, Hilser VJ, Bahar I, Karanicolas J, Stock G, Hamm P, Stote RH, Eberhardt J, Chebaro Y, Dejaegere A, Cecchini M, Changeux JP, Bolhuis PG, Vreede J, Faccioli P, Orioli S, Ravasio R, Yan L, Brito C, Wyart M, Gkeka P, Rivalta I, Palermo G, McCammon JA, Panecka-Hofman J, Wade RC, Di Pizio A, Niv MY, Nussinov R, Tsai CJ, Jang H, Padhorny D, Kozakov D, McLeish T. Allostery in Its Many Disguises: From Theory to Applications. Structure (London, England : 1993). 2019 Apr 02;27(4):566-78.   PMCID: PMC6688844
Buuh ZY, Lyu Z, Wang RE. Interrogating the Roles of Post-Translational Modifications of Non-Histone Proteins. Journal of medicinal chemistry. 2018 Apr 26;61(8):3239-52.
Shaytan AK, Xiao H, Armeev GA, Gaykalova DA, Komarova GA, Wu C, Studitsky VM, Landsman D, Panchenko AR. Structural interpretation of DNA-protein hydroxyl-radical footprinting experiments with high resolution using HYDROID. Nature protocols. 2018 Nov;13(11):2535-56.   PMCID: PMC6322412
Levy RM, Haldane A, Flynn WF. Potts Hamiltonian models of protein co-variation, free energy landscapes, and evolutionary fitness. Current opinion in structural biology. 2017 Apr;43:55-62.
Pal RK, Haider K, Kaur D, Flynn W, Xia J, Levy RM, Taran T, Wickstrom L, Kurtzman T, Gallicchio E. A combined treatment of hydration and dynamical effects for the modeling of host-guest binding thermodynamics: the SAMPL5 blinded challenge. Journal of computer-aided molecular design. 2017 Jan;31(1):29-44.   PMCID: PMC5477994
Modi V, Xu Q, Adhikari S, Dunbrack RL. Assessment of template-based modeling of protein structure in CASP11. Proteins. 2016 Sep;84 Suppl 1:200-20.   PMCID: PMC5030193
Kumar A, Butler BM, Kumar S, Ozkan SB. Integration of structural dynamics and molecular evolution via protein interaction networks: a new era in genomic medicine. Current opinion in structural biology. 2015 Dec;35:135-42.   PMCID: 4856467
Karlan BY, Thorpe J, Watabayashi K, Drescher CW, Palomares M, Daly MB, Paley P, Hillard P, Andersen MR, Anderson G, Drapkin R, Urban N. Use of CA125 and HE4 serum markers to predict ovarian cancer in elevated-risk women. Cancer Epidemiol Biomarkers Prev. 2014 Jul;23(7):1383-93.   PMCID: 4082470
Selwood T, Jaffe EK. Dynamic dissociating homo-oligomers and the control of protein function. Archives of biochemistry and biophysics. 2012 Mar 15;519(2):131-43.   PMCID: PMC3298769
Lichtenstein MP, Carriba P, Baltrons MA, Wojciak-Stothard B, Peterson JR, Garcia A, Galea E. Secretase-independent and RhoGTPase/PAK/ERK-dependent regulation of cytoskeleton dynamics in astrocytes by NSAIDs and derivatives. Journal of Alzheimer's Disease. 2010 Jan;22(4):1135-55.   PMCID: Not NIH funded
Ramirez UD, Myachina F, Stith L, Jaffe EK. Docking to large allosteric binding sites on protein surfaces. Advances in experimental medicine and biology. 2010 Jan;680:481-8.   PMCID: PMC2946403
Poleshko A, Palagin I, Zhang R, Boimel P, Castagna C, Adams PD, Skalka AM, Katz RA. Identification of cellular proteins that maintain retroviral epigenetic silencing: evidence for an antiviral response. J Virol. 2008 Mar;82(5):2313-23.   PMCID: PMC2258957
Xu Q, Canutescu AA, Wang G, Shapovalov M, Obradovic Z, Dunbrack RL. Statistical analysis of interface similarity in crystals of homologous proteins. J Mol Biol. 2008 Aug 29;381(2):487-507.   PMCID: PMC2573399
Patel BB, Li XM, Dixon MP, Blagoi EL, Seeholzer SH, Chen Y, Miller CG, He YA, Tetruashvily M, Chaudhry AH, Ke E, Xie J, Cooper H, Bellacosa A, Clapper ML, Boman BM, Zhang T, Litwin S, Ross EA, Conrad P, Crowell JA, Kopelovich L, Knudson A, Yeung AT. Searchable high-resolution 2D gel proteome of the human colon crypt. J Proteome Res. 2007 Jun;6(6):2232-8.
van Slegtenhorst M, Khabibullin D, Hartman TR, Nicolas E, Kruger WD, Henske EP. The Birt-Hogg-Dube and tuberous sclerosis complex homologs have opposing roles in amino acid homeostasis in Schizosaccharomyces pombe. The Journal of biological chemistry. 2007 Aug 24;282(34):24583-90.
Roder H, Maki K, Cheng H. Early events in protein folding explored by rapid mixing methods. Chemical reviews. 2006 May;106(5):1836-61.
Chakravarti A, Winter K, Wu CL, Kaufman D, Hammond E, Parliament M, Tester W, Hagan M, Grignon D, Heney N, Pollack A, Sandler H, Shipley W. Expression of the epidermal growth factor receptor and Her-2 are predictors of favorable outcome and reduced complete response rates, respectively, in patients with muscle-invading bladder cancers treated by concurrent radiation and cisplatin-based chemotherapy: A report from the Radiation Therapy Oncology Group. International Journal of Radiation Oncology Biology Physics. 2005 Jan;62(2):309-17.
Manne SL, Ostroff JS, Winkel G, Fox K, Grana G, Miller E, Ross S, Frazier T, Buyyounouski MK, Hanlon AL, Eisenberg DF, Horwitz EM, Feigenberg SJ, Uzzo RG, Pollack A, Morrow M, Chen JQ, Yager JD, Russo J, Bassi DE, Fu J, Lopez de Cicco R, Klein-Szanto AJ, Devlin J, Sherman E, Altomare DA, Vaslet CA, Skele KL, De Rienzo A, Devarajan K, Jhanwar SC, McClatchey AI, Kane AB, Testa JR, Murphy ME, Langer CJ, Mehta MP, Viterbo R, Greenberg RE, Al-Saleem T, Canutescu AA, Dunbrack RL, Serebriiskii IG, Fang R, Latypova E, Hopkins R, Vinson C, Joung JK, Golemis EA. Couple-focused group intervention for women with early stage breast cancer. . J Consult Clin Psychol. 2005 Sep 15;73(4):634-46.
The above publications are sorted by year, faculty last name, and first author. Click on any highlighted author listed to find all publications attributed to that individual. Click on the publication title to see the abstract. First authors who are faculty are highlighted like this. Last authors who are faculty are highlighted like this. Other authors who are faculty are highlighted like this.

MeSH cloud from publications including the MeSH term Proteins

Proteins chemistry metabolism genetics Molecular Models methods Algorithms Amino Acid Sequence Protein Conformation Thermodynamics statistics & numerical data Computer Simulation analysis Statistical Models Software Protein Binding Computational Biology pharmacology Molecular Dynamics Simulation 80 and over Aged Protein Databases Molecular Sequence Data physiology Amino Acids Protein Folding Base Sequence drug effects Female Middle Aged Amino Acid Sequence Homology Allosteric Regulation Protein Interaction Mapping Aged Allosteric Site Molecular Evolution Secondary Protein Structure Sequence Alignment Enzyme Inhibitors Quaternary Protein Structure Drug Design Proto-Oncogene Proteins c-raf Disease control Protein Subunits signal transduction complications Bacterial Proteins Sensitivity and Specificity Male Comparative Study Tumors Escherichia coli allosteric switches Glutathione Transferase Astrocytes Protein Interaction Domains and Motifs Radiosurgery molecular dynamics Alzheimer's Disease 0 (Plasmids) Biological organs Colorectal Neoplasms Salt effects ROC Curve Sampl5 Antineoplastic Agents Terminology as Topic Phenotype Ovarian Neoplasms Debye-Huckel Acetylation Gel Electrophoresis-Two-Dimensional 0 (Anticonvulsants) Alleles Genomics Saccharomyces cerevisiae Porphobilinogen Synthase Proto-Oncogene Proteins Agbnp2 Methylation allosteric material Internet Mutation Signal Transducing Adaptor Proteins energy landscape Nuclear Proteins epidermal growth factor receptor Cytoskeleton DNA Footprinting Epidermal growth factor receptor Oncology Fungal Gene Expression Regulation Enzyme Stability Non-Histone Chromosomal Proteins Adult Dimerization Adrenal Gland Neoplasms Canavanine 0 (Proteins) Reproducibility of Results Hydration Site Analysis (HSA) Solutions Metabolic Networks and Pathways Citrullination Energy Transfer blood surgery Chemotherapy Anti Inflammatory Drugs Disease Small Interfering RNA homology modeling Adrenal Cortex Hormones Recombinant Fusion Proteins Solvents Radiation Therapy Oncology Group (RTOG) Casp Non-US Gov't Research Support Bedam protein conformational changes Superoxide Dismutase DNA Primers Protein Multimerization Hydroxyl Radical Seizures Early Detection of Cancer Polyacrylamide Gel Electrophoresis Medicine EC 27137 (Proto-Oncogene Proteins c-raf) Immunostaining Two-Hybrid System Techniques Binding Sites Ubiquitination X-Ray Crystallography User-Computer Interface protein function Schizosaccharomyces pombe Proteins Kinetics Schizosaccharomyces Colon Systems Integration bladder cancer Tumor Biomarkers Water US Gov't Research Support-PHS Biological Models Drosophila melanogaster Palliative Care Proteomics therapy DNA-Binding Proteins
Last updated on Wednesday, August 12, 2020