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Publication Listing for the MeSH term Protein Conformation. Found 61 abstracts

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Wan H, Ge Y, Razavi A, Voelz VA. Reconciling Simulated Ensembles of Apomyoglobin with Experimental Hydrogen/Deuterium Exchange Data Using Bayesian Inference and Multiensemble Markov State Models. J Chem Theory Comput. 2020 Feb 11;16(2):1333-48.
Haldane A, Levy RM. Influence of multiple-sequence-alignment depth on Potts statistical models of protein covariation. Physical review E. 2019 Mar;99(3-1):032405.   PMCID: PMC6508952
Shapovalov M, Vucetic S, Dunbrack RL. A new clustering and nomenclature for beta turns derived from high-resolution protein structures. PLoS computational biology. 2019 Mar;15(3):e1006844.   PMCID: PMC6424458
Adolf-Bryfogle J, Kalyuzhniy O, Kubitz M, Weitzner BD, Hu X, Adachi Y, Schief WR, Dunbrack RL. RosettaAntibodyDesign (RAbD): A general framework for computational antibody design. PLoS computational biology. 2018 Apr 27;14(4):e1006112.   PMCID: PMC5942852
Kasimova MA, Yazici AT, Yudin Y, Granata D, Klein ML, Rohacs T, Carnevale V. A hypothetical molecular mechanism for TRPV1 activation that invokes rotation of an S6 asparagine. The Journal of general physiology. 2018 Nov 05;150(11):1554-66.   PMCID: PMC6219692
Kasimova MA, Yazici A, Yudin Y, Granata D, Klein ML, Rohacs T, Carnevale V. Ion Channel Sensing: Are Fluctuations the Crux of the Matter?. The journal of physical chemistry letters. 2018 Mar 15;9(6):1260-4.
Alford RF, Leaver-Fay A, Jeliazkov JR, O'Meara MJ, DiMaio FP, Park H, Shapovalov MV, Renfrew PD, Mulligan VK, Kappel K, Labonte JW, Pacella MS, Bonneau R, Bradley P, Dunbrack RL, Das R, Baker D, Kuhlman B, Kortemme T, Gray JJ. The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design. Journal of Chemical Theory and Computation. 2017 Jun 13;13(6):3031-48.   PMCID: PMC5717763
Deng N, Flynn WF, Xia J, Vijayan RS, Zhang B, He P, Mentes A, Gallicchio E, Levy RM. Large scale free energy calculations for blind predictions of protein-ligand binding: the D3R Grand Challenge 2015. Journal of computer-aided molecular design. 2016 Sep;30(9):743-51.
Wickstrom L, Deng N, He P, Mentes A, Nguyen C, Gilson MK, Kurtzman T, Gallicchio E, Levy RM. Parameterization of an effective potential for protein-ligand binding from host-guest affinity data. Journal of molecular recognition : JMR. 2016 Jan;29(1):10-21.   PMCID: PMC4715590
Deng N, Forli S, He P, Perryman A, Wickstrom L, Vijayan RS, Tiefenbrunn T, Stout D, Gallicchio E, Olson AJ, Levy RM. Distinguishing binders from false positives by free energy calculations: fragment screening against the flap site of HIV protease. J Phys Chem B. 2015 Jan 22;119(3):976-88.   PMCID: PMC4306491
Gianti E, Carnevale V, DeGrado WF, Klein ML, Fiorin G. Hydrogen-bonded water molecules in the M2 channel of the influenza A virus guide the binding preferences of ammonium-based inhibitors. J Phys Chem B. 2015 Jan 22;119(3):1173-83.   PMCID: PMC4386636
Gosselin-Badaroudine P, Moreau A, Delemotte L, Cens T, Collet C, Rousset M, Charnet P, Klein ML, Chahine M. Characterization of the honeybee AmNaV1 channel and tools to assess the toxicity of insecticides. Sci Rep. 2015 Jul 23;5:12475.   PMCID: 4894402
Lecht S, Chiaverelli RA, Gerstenhaber J, Calvete JJ, Lazarovici P, Casewell NR, Harrison R, Lelkes PI, Marcinkiewicz C. Anti-angiogenic activities of snake venom CRISP isolated from Echis carinatus sochureki. Biochimica et biophysica acta. 2015 Jun;1850(6):1169-79.
Vijayan RS, He P, Modi V, Duong-Ly KC, Ma HC, Peterson JR, Dunbrack RL, Levy RM. Conformational Analysis of the DFG-Out Kinase Motif and Biochemical Profiling of Structurally Validated Type II Inhibitors. Journal of medicinal chemistry. 2015 Jan;58(1):466-79.   PMCID: 4326797
Wakefield AE, Wuest WM, Voelz VA. Molecular Simulation of Conformational Pre-Organization in Cyclic RGD Peptides. Journal of chemical information and modeling. 2015 Apr 27;55(4):806-13.
Zhang S, Moussodia RO, Vertesy S, Andre S, Klein ML, Gabius HJ, Percec V. Unraveling functional significance of natural variations of a human galectin by glycodendrimersomes with programmable glycan surface. Proc Natl Acad Sci U S A. 2015 May 05;112(18):5585-90.   PMCID: PMC4426414
Prakash S, Singh R, Lodhi N. Histone demethylases and control of gene expression in plants. Cell Mol Biol (Noisy-le-grand). 2014 Dec 24;60(5):97-105.
Thomas CJ, Kotova E, Andrake M, Adolf-Bryfogle J, Glaser R, Regnard C, Tulin AV. Kinase-mediated changes in nucleosome conformation trigger chromatin decondensation via poly(ADP-ribosyl)ation. Molecular cell. 2014 Mar 06;53(5):831-42.   PMCID: PMC3951681
Yang J, Zhu L, Zhang H, Hirbawi J, Fukuda K, Dwivedi P, Liu J, Byzova T, Plow EF, Wu J, Qin J. Conformational activation of talin by RIAM triggers integrin-mediated cell adhesion. Nat Commun. 2014 Dec 18;5:5880.   PMCID: 4432866
Anastassiadis T, Duong-Ly KC, Deacon SW, Lafontant A, Ma H, Devarajan K, Dunbrack RL, Wu J, Peterson JR. A highly selective dual insulin receptor (IR)/insulin-like growth factor 1 receptor (IGF-1R) inhibitor derived from an extracellular signal-regulated kinase (ERK) inhibitor. The Journal of biological chemistry. 2013 Sep 27;288(39):28068-77.   PMCID: PMC3784719
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MeSH cloud from publications including the MeSH term Protein Conformation

Protein Conformation chemistry metabolism genetics Molecular Models Amino Acid Sequence Protein Binding Thermodynamics Molecular Dynamics Simulation Mutation Drug Design Ligands pharmacology drug effects Molecular Docking Simulation Computer Simulation Binding Sites Molecular Sequence Data HIV Protease CHO Cells Protein Kinase Inhibitors immunology Cell Membrane Hydrophobic and Hydrophilic Interactions Phosphorylation methods Algorithms antagonists & inhibitors TRPV Cation Channels Signal Transduction Tertiary Protein Structure Drug Dose-Response Relationship Gene Expression Regulation Cricetulus Proteins Cyclic Peptides Apoproteins Plant Gene Expression Regulation Escherichia coli Angiogenic Proteins blood supply Sequence Alignment Amino Acids Protein Kinases Polysaccharides Software ROC Curve Toxicity Tests Terminology as Topic Physiologic Neovascularization self-assembly force field Roc Drosophila Chemical Models Plant Proteins Asparagine Binding free energy classification Signal Transducing Adaptor Proteins Histone Demethylases Glioma Viper Venoms Angiogenesis Inhibitors DNA Methylation Alternative Splicing Real-Time Polymerase Chain Reaction adhesion Reproducibility of Results MAP Kinase Signaling System Sodium Channel Blockers Biocatalysis Hydrogen Bonding Cell Communication toxicity Complementarity Determining Regions glycobiology Open Reading Frames Migration Bedam Monte Carlo Method Amino Acid Motifs IGF Type 1 Receptor Poly(ADP-ribose) Polymerases Small Molecule Libraries pathology Insulin Receptor Gc2015 Poly Adenosine Diphosphate Ribose X-Ray Crystallography Immunohistochemistry purification Angiogenesis Kinetics Water Cell Adhesion Pyridazines Platelet Glycoprotein GPIIb-IIIa Complex Adenosine Triphosphate membrane mimic Autoimmune Diseases Porosity Histones Protein Databases Static Electricity Prospective Studies Protein Transport Ammonium Compounds Preclinical Drug Evaluation Gist Crisp Inhibitory Concentration 50 free energy Viral Matrix Proteins Allosteric Regulation Markov Chains Allosteric Site statistics & numerical data isolation & Talin Permeability Quail Recombinant Proteins Bees Peptidomimetics Insecticides Hsp90 Voltage-Gated Sodium Channels DNA Antigen-Antibody Complex Endothelial Cells Cell proliferation D3r Myoglobin Micrococcal Nuclease Pyrazoles Drosophila Proteins enzymology Genetic Models Bayes Theorem Human Umbilical Vein Endothelial Cells Nucleosomes agglutination Membrane Proteins Genetic Promoter Regions ultrastructure Pathologic Neovascularization Antibodies Computational Biology Cluster Analysis
Last updated on Thursday, April 02, 2020