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Publication Listing for the MeSH term Oligonucleotide Array Sequence Analysis. Found 31 abstracts

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Kung CP, Khaku S, Jennis M, Zhou Y, Murphy ME. Identification of TRIML2, a novel p53 target, that enhances p53 SUMOylation and regulates the transactivation of proapoptotic genes. Mol Cancer Res. 2015 Feb;13(2):250-62.   PMCID: PMC4336799
Tang B, Kadariya Y, Chen Y, Slifker M, Kruger WD. Expression of MTAP inhibits tumor-related phenotypes in HT1080 cells via a mechanism unrelated to its enzymatic function. G3 (Bethesda, Md). 2014 Jan;5(1):35-44.   PMCID: 4291467
Peri S, de Cicco RL, Santucci-Pereira J, Slifker M, Ross EA, Russo IH, Russo PA, Arslan AA, Belitskaya-Levy I, Zeleniuch-Jacquotte A, Bordas P, Lenner P, Ahman J, Afanasyeva Y, Johansson R, Sheriff F, Hallmans G, Toniolo P, Russo J. Defining the genomic signature of the parous breast. BMC medical genomics. 2012 Jan;5:46.   PMCID: 3487939
Konstantinopoulos PA, Cannistra SA, Fountzilas H, Culhane A, Pillay K, Rueda B, Cramer D, Seiden M, Birrer M, Coukos G, Zhang L, Quackenbush J, Spentzos D. Integrated analysis of multiple microarray datasets identifies a reproducible survival predictor in ovarian cancer. PLoS One. 2011 Mar;6(3):e18202.   PMCID: 3066217
Altomare DA, Rybak SM, Pei J, Maizel JV, Cheung M, Testa JR, Shogen K. Onconase responsive genes in human mesothelioma cells: implications for an RNA damaging therapeutic agent. BMC cancer. 2010 Jan;10:34.   PMCID: PMC2829496
Bellacosa A, Godwin AK, Peri S, Devarajan K, Caretti E, Vanderveer L, Bove B, Slater C, Zhou Y, Daly M, Howard S, Campbell KS, Nicolas E, Yeung AT, Clapper ML, Crowell JA, Lynch HT, Ross E, Kopelovich L, Knudson AG. Altered gene expression in morphologically normal epithelial cells from heterozygous carriers of BRCA1 or BRCA2 mutations. Cancer Prev Res (Phila Pa). 2010 Jan;3(1):48-61.   PMCID: PMC2804937
Meireles SI, Esteves GH, Hirata R, Peri S, Devarajan K, Slifker M, Mosier SL, Peng J, Vadhanam MV, Hurst HE, Neves EJ, Reis LF, Gairola CG, Gupta RC, Clapper ML. Early changes in gene expression induced by tobacco smoke: Evidence for the importance of estrogen within lung tissue. Cancer prevention research (Philadelphia, Pa). 2010 Jun;3(6):707-17.   PMCID: PMC2896420
Cai KQ, Wu H, Klein-Szanto AJ, Xu XX. Acquisition of a second mutation of the Tp53 alleles immediately precedes epithelial morphological transformation in ovarian tumorigenicity. Gynecol Oncol. 2009 Jul;114(1):18-25.   PMCID: PMC2739736
Gupta S, Kuhnisch J, Mustafa A, Lhotak S, Schlachterman A, Slifker MJ, Klein-Szanto A, High KA, Austin RC, Kruger WD. Mouse models of cystathionine beta-synthase deficiency reveal significant threshold effects of hyperhomocysteinemia. FASEB J. 2009 Mar;23(3):883-93.   PMCID: PMC2653989
Merkel G, Andrake MD, Ramcharan J, Skalka AM. Oligonucleotide-based assays for integrase activity. Methods. 2009 Apr;47(4):243-8.   PMCID: PMC2743288
Caretti E, Devarajan K, Coudry R, Ross E, Clapper ML, Cooper HS, Bellacosa A. Comparison of RNA amplification methods and chip platforms for microarray analysis of samples processed by laser capture microdissection. Journal of cellular biochemistry. 2008 Feb;103(2):556-63.
Devarajan K. Nonnegative matrix factorization: an analytical and interpretive tool in computational biology. PLoS computational biology. 2008 Jan;4(7):e1000029.   PMCID: PMC2447881
Moral R, Wang R, Russo IH, Mailo DA, Lamartiniere CA, Russo J. The plasticizer butyl benzyl phthalate induces genomic changes in rat mammary gland after neonatal/prepubertal exposure. BMC Genomics. 2007 Jan;8:453.
Pannier AK, Ariazi EA, Bellis AD, Bengali Z, Jordan VC, Shea LD. Bioluminescence imaging for assessment and normalization in transfected cell arrays. Biotechnology and Bioengineering. 2007 Oct;98(2):486-97.
Spittle C, Ward MR, Nathanson KL, Gimotty PA, Rappaport E, Brose MS, Medina A, Letrero R, Herlyn M, Edwards RH. Application of a BRAF pyrosequencing assay for mutation detection and copy number analysis in malignant melanoma. J Mol Diagn. 2007 Sep;9(4):464-71.
Bidaut G, Manion FJ, Garcia C, Ochs MF. WaveRead: automatic measurement of relative gene expression levels from microarrays using wavelet analysis. Journal of Biomedical Informatics. 2006 Aug;39(4):379-88.
Bidaut G, Suhre K, Claverie JM, Ochs MF. Determination of strongly overlapping signaling activity from microarray data. BMC Bioinformatics. 2006 Jan;7:99.
Wang G, Kossenkov AV, Ochs MF. LS-NMF: a modified non-negative matrix factorization algorithm utilizing uncertainty estimates. BMC Bioinformatics. 2006 Jan;7:175.
Hayashi J, Stoyanova R, Seeger C. The transcriptome of HCV replicon expressing cell lines in the presence of alpha interferon. Virology. 2005 May 10;335(2):264-75.
Nunez MI, Rosen DG, Ludes-Meyers JH, Abba MC, Kil H, Page R, Klein-Szanto AJ, Godwin AK, Liu J, Mills GB, Aldaz CM. WWOX protein expression varies among ovarian carcinoma histotypes and correlates with less favorable outcome. BMC cancer. 2005 Jan;5(1):64.
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MeSH cloud from publications including the MeSH term Oligonucleotide Array Sequence Analysis

Oligonucleotide Array Sequence Analysis genetics metabolism Gene Expression Profiling Female physiology methods pathology Neoplastic Gene Expression Regulation Time Factors Mutation Automated Pattern Recognition Reverse Transcriptase Polymerase Chain Reaction Reproducibility of Results Messenger RNA Ovarian Neoplasms Tumor Cell Line Non-US Gov't Research Support Algorithms Mice Alleles biosynthesis Gene Expression drug effects cytology Up-Regulation Genetic Predisposition to Disease Lung Neoplasms ge [Genetics] Ovary Genetic Databases Tumor Suppressor Protein p53 Aged Molecular Sequence Data Transcription Factors Breast Immunohistochemistry Pregnancy Signal Transduction mt [Methods] Microdissection Artificial Intelligence NIH Research Support-Extramural Middle Aged ph [Physiology] Human Genome Heterozygote enzymology Paraffin Embedding Estrogens Inflammation Random Allocation Enzymologic Gene Expression Regulation Software Gene Knock-In Techniques Immunoblotting Down-Regulation Plasticizers Antineoplastic Agents Phenotype Protein Folding derivatives Inbred A Mice Wound Healing Apoptosis pd [Pharmacology] SCID Mice Quality Control Nucleic Acid Amplification Techniques Biological Markers classification Research Design Data Mining Enzyme Activation Melanoma methionine Real-Time Polymerase Chain Reaction Adult sn [Statistics & Tobacco Smoke Pollution Phthalic Acids Western Blotting Survival Analysis HCT116 Cells Rats blood RNA Sexual Maturation Multivariate Analysis toxicity 80 and over Aged Fibroblasts Hyperhomocysteinemia Tissue Fixation Enzyme Induction Oxidoreductases Breast Neoplasms Cryptochromes Cell Line HIV-1 Transcriptome Cyclins Ornithine Decarboxylase Animal Mammary Glands Microsomes Systems Integration Animal Disease Models deficiency Carrier Proteins Cyclin-Dependent Kinase Inhibitor p21 Biological Models Progesterone Receptors Biotinylation Sprague-Dawley Rats Liver etiology Myocardium Treatment Outcome Cultured Cells Estradiol Colonic Neoplasms Lung Codon Adenocarcinoma Endoplasmic Reticulum Cell Survival Aorta Frozen Sections Prognosis Viral RNA 0 (Interferon-alpha) Aryl Hydrocarbon Hydroxylases DNA Mutational Analysis Numerical Data] Renilla Luciferases Intestinal Mucosa Neoplasm DNA Replicon de [Drug Effects] BRCA2 Genes Hepacivirus Tumor Suppressor Genes Mesothelioma instrumentation Transfection DNA Sequence Analysis Longevity BRCA1 Genes analogs & Atmosphere Exposure Chambers
Last updated on Tuesday, December 04, 2018