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Publication Listing for the MeSH term Ligands. Found 19 abstracts

Cui D, Zhang BW, Matubayasi N, Levy RM. The Role of Interfacial Water in Protein-Ligand Binding: Insights from the Indirect Solvent Mediated Potential of Mean Force. J Chem Theory Comput. 2018 Feb 13;14(2):512-26.   PMCID: PMC5897112
Xia J, Flynn W, Levy RM. Improving Prediction Accuracy of Binding Free Energies and Poses of HIV Integrase Complexes Using the Binding Energy Distribution Analysis Method with Flattening Potentials. Journal of chemical information and modeling. 2018 Jul 23;58(7):1356-71.   PMCID: PMC6287956
Malhotra S, Karanicolas J. When Does Chemical Elaboration Induce a Ligand To Change Its Binding Mode?. Journal of medicinal chemistry. 2017 Jan 12;60(1):128-45.   PMCID: PMC5525026
Pal RK, Haider K, Kaur D, Flynn W, Xia J, Levy RM, Taran T, Wickstrom L, Kurtzman T, Gallicchio E. A combined treatment of hydration and dynamical effects for the modeling of host-guest binding thermodynamics: the SAMPL5 blinded challenge. Journal of computer-aided molecular design. 2017 Jan;31(1):29-44.   PMCID: PMC5477994
Deng N, Flynn WF, Xia J, Vijayan RS, Zhang B, He P, Mentes A, Gallicchio E, Levy RM. Large scale free energy calculations for blind predictions of protein-ligand binding: the D3R Grand Challenge 2015. Journal of computer-aided molecular design. 2016 Sep;30(9):743-51.
Haldane A, Flynn WF, He P, Vijayan RS, Levy RM. Structural propensities of kinase family proteins from a Potts model of residue co-variation. Protein science : a publication of the Protein Society. 2016 Aug;25(8):1378-84.   PMCID: PMC4972195
Wickstrom L, Deng N, He P, Mentes A, Nguyen C, Gilson MK, Kurtzman T, Gallicchio E, Levy RM. Parameterization of an effective potential for protein-ligand binding from host-guest affinity data. Journal of molecular recognition : JMR. 2016 Jan;29(1):10-21.   PMCID: PMC4715590
Deng N, Forli S, He P, Perryman A, Wickstrom L, Vijayan RS, Tiefenbrunn T, Stout D, Gallicchio E, Olson AJ, Levy RM. Distinguishing binders from false positives by free energy calculations: fragment screening against the flap site of HIV protease. J Phys Chem B. 2015 Jan 22;119(3):976-88.   PMCID: PMC4306491
Steblyanko M, Anikeeva N, Campbell KS, Keen JH, Sykulev Y. Integrins influence the size and dynamics of signaling microclusters in a Pyk2-dependent manner. Journal of Biological Chemistry. 2015 May 08;290(19):11833-42.   PMCID: 4424324
Tarawneh A, Leon F, Pettaway S, Elokely KM, Klein ML, Lambert J, Mansoor A, Cutler SJ. Flavonoids from Perovskia atriplicifolia and Their in Vitro Displacement of the Respective Radioligands for Human Opioid and Cannabinoid Receptors. J Nat Prod. 2015 Jun 26;78(6):1461-5.
Zhang S, Moussodia RO, Vertesy S, Andre S, Klein ML, Gabius HJ, Percec V. Unraveling functional significance of natural variations of a human galectin by glycodendrimersomes with programmable glycan surface. Proc Natl Acad Sci U S A. 2015 May 05;112(18):5585-90.   PMCID: PMC4426414
Lawrence SH, Ramirez UD, Selwood T, Stith L, Jaffe EK. Allosteric inhibition of human porphobilinogen synthase. The Journal of biological chemistry. 2009 Dec 18;284(51):35807-17.   PMCID: 2791010
Latypov RF, Maki K, Cheng H, Luck SD, Roder H. Folding mechanism of reduced Cytochrome c: equilibrium and kinetic properties in the presence of carbon monoxide. J Mol Biol. 2008 Nov 07;383(2):437-53.   PMCID: PMC2653224
Adams GP, Horak EM, Weiner LM, Marks JD. Bispecific scFv antibody molecules capable of binding to different epitopes of EGFR protein family for diagnosis and treatment of cancer. 2004 Apr 04;:57 pp.
Conejo-Garcia JR, Benencia F, Courreges MC, Khang E, Zhang L, Mohamed-Hadley A, Vinocur JM, Buckanovich RJ, Thompson CB, Levine B, Coukos G. Letal, A tumor-associated NKG2D immunoreceptor ligand, induces activation and expansion of effector immune cells. Cancer Biol Ther. 2003 Jul;2(4):446-51.
Zhang H, Merchant MS, Chua KS, Khanna C, Helman LJ, Telford B, Ward Y, Summers J, Toretsky J, Thomas EK, June CH, Mackall CL. Tumor expression of 4-1BB ligand sustains tumor lytic T cells. Cancer Biol Ther. 2003 Sep;2(5):579-86.
Xiao GH, Jeffers M, Bellacosa A, Mitsuuchi Y, Vande Woude GF, Testa JR. Anti-apoptotic signaling by hepatocyte growth factor/Met via the phosphatidylinositol 3-kinase/Akt and mitogen-activated protein kinase pathways. Proc Natl Acad Sci U S A. 2001 Jan 02;98(1):247-52.   PMCID: PMC14576
McQueney MS, Anderson KS, Markham GD. Energetics of S-adenosylmethionine synthetase catalysis. Biochemistry. 2000 Apr 18;39(15):4443-54.
Shastry MC, Roder H. Evidence for barrier-limited protein folding kinetics on the microsecond time scale. Nat Struct Biol. 1998 May;5(5):385-92.
The above publications are sorted by year, faculty last name, and first author. Click on any highlighted author listed to find all publications attributed to that individual. Click on the publication title to see the abstract. First authors who are faculty are highlighted like this. Last authors who are faculty are highlighted like this. Other authors who are faculty are highlighted like this.

MeSH cloud from publications including the MeSH term Ligands

Ligands chemistry metabolism Thermodynamics Protein Binding Binding Sites Molecular Models Kinetics Non-US Gov't Support immunology Protein Conformation drug effects genetics Solvents US Gov't Support-PHS Water Mice pharmacology Amino Acid Sequence Molecular Structure Human Protein Folding Molecular Sequence Data Apoptosis HIV Protease Computer Simulation Flavonoids Drug Design HIV Integrase enzymology Lymphocyte Activation Bedam Antigen Receptors-T-Cell Mutation Natural Killer Cells Molecular Conformation ROC Curve Molecular Docking Simulation antagonists & inhibitors Molecular Dynamics Simulation Horses methods Female Protein-Serine-Threonine Kinases Integrin receptors Oncogene Proteins v-abl Cytochrome c Inbred C57BL Mice Intercellular Adhesion Molecule-1 Animal Male Comparative Study Escherichia coli Salivary gland 1-Phosphatidylinositol 3-Kinase Adoptive immunotherapy Protein sequences bispecific antibody scFv EGFR family member cancer diagnosis therapy Inflammation signaling microclusters Polysaccharides Proto-Oncogene Proteins c-met Epidermal growth factor receptors Salt effects Interferon Type II Sampl5 Proto-Oncogene Proteins c-akt Ovarian Neoplasms Fluorescence Spectrometry self-assembly Debye-Huckel Genetic vectors Chromones force field Roc bispecific scFv antibody mols capable of binding to different epitopes of EGFR protein family for diagnosis and treatment of cancer) Amino Acid Sequence Homology kinase BSU (Biological study Antibodies and Immunoglobulins Role: BPN (Biosynthetic preparation)-unclassified)-DGN (Diagnostic use)-PRP (Properties)-THU (Therapeutic use)-BIOL (Biological study)-PREP (Preparation)-USES (Uses) (bispecific scFv antibody Bone Neoplasms SCID Mice lymphocyte Imaging agents (NMR contrast Proto-Oncogene Proteins Porphobilinogen Synthase src-Family Kinases cellular immune response Drug delivery systems (liposomes Viral vectors (bispecific scFv antibody mols capable of binding to different epitopes of EGFR protein family for diagnosis and treatment of cancer) Agbnp2 of EGFR protein family for diagnosis and treatment of cancer) Binding free energy Dendritic Cells Mitogen-Activated Protein Kinase 14 Ovary Positron-emission tomography Factor Xa Enzyme Activation Drugs Linking agents Alternative Splicing Potts model Adcc Gamma ray (emitters Adult Samples (biol or biopsy adhesion 3T3 Cells Hydration Site Analysis (HSA) Biomolecular Nuclear Magnetic Resonance Stomach MAP Kinase Signaling System Molecular cloning Tretinoin Cytotoxic T-Lymphocytes Chemotherapy conformational preference Methionine Cell Communication Heme Animal cell Lymphocytes CD28 Antigens Area Under Curve glycobiology Bacteriophage Radiation (external beam Amino Acid Motifs CD8-Positive T-Lymphocytes unclassified) Peptides Role: BSU (Biological study-DGN (Diagnostic use)-THU (Therapeutic use)-BIOL (Biological study)-USES (Uses) (linker Animal tissue Lipid Bilayers Secondary Protein Structure Gc2015 Hydrolysis signaling Phosphates Diphosphates Interleukin-2 Methionine Adenosyltransferase Isomerism Adenosine Triphosphate membrane mimic IgG Receptors Autoimmune Diseases Drug delivery systems (carriers Cytoprotection S-Adenosylmethionine Protein Databases Prospective Studies
Last updated on Thursday, April 02, 2020