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Publication Listing for the MeSH term Computational Biology. Found 19 abstracts

Modi V, Xu Q, Adhikari S, Dunbrack RL. Assessment of template-based modeling of protein structure in CASP11. Proteins. 2016 Sep;84 Suppl 1:200-20.   PMCID: PMC5030193
Flynn WF, Chang MW, Tan Z, Oliveira G, Yuan J, Okulicz JF, Torbett BE, Levy RM. Deep sequencing of protease inhibitor resistant HIV patient isolates reveals patterns of correlated mutations in Gag and protease. PLoS Comput Biol. 2015 Apr;11(4):e1004249.   PMCID: PMC4404092
Masica DL, Li S, Douville C, Manola J, Ferris RL, Burtness B, Forastiere AA, Koch WM, Chung CH, Karchin R. Predicting survival in head and neck squamous cell carcinoma from TP53 mutation. Hum Genet. 2015 May;134(5):497-507.   PMCID: 4324386
van Esterik JC, Vitins AP, Hodemaekers HM, Kamstra JH, Legler J, Pennings JL, Steegenga WT, Lute C, Jelinek J, Issa JP, Dolle ME, van der Ven LT. Liver DNA methylation analysis in adult female C57BL/6JxFVB mice following perinatal exposure to bisphenol A. Toxicology letters. 2015 Jan 05;232(1):293-300.
Yan X, Hu Z, Feng Y, Hu X, Yuan J, Zhao SD, Zhang Y, Yang L, Shan W, He Q, Fan L, Kandalaft LE, Tanyi JL, Li C, Yuan CX, Zhang D, Yuan H, Hua K, Lu Y, Katsaros D, Huang Q, Montone K, Fan Y, Coukos G, Boyd J, Sood AK, Rebbeck T, Mills GB, Dang CV, Zhang L. Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers. Cancer Cell. 2015 Oct 12;28(4):529-40.   PMCID: 4777353
Yan X, Hu Z, Feng Y, Hu X, Yuan J, Zhao SD, Zhang Y, Yang L, Shan W, He Q, Fan L, Kandalaft LE, Tanyi JL, Li C, Yuan CX, Zhang D, Yuan H, Hua K, Lu Y, Katsaros D, Huang Q, Montone K, Fan Y, Coukos G, Boyd J, Sood AK, Rebbeck T, Mills GB, Dang CV, Zhang L. Comprehensive Genomic Characterization of Long Non-coding RNAs across Human Cancers. Cancer Cell. 2015 Oct 12;28(4):529-40.
Tanaka N, Delemotte L, Klein ML, Komaromy AM, Tanaka JC. A cyclic nucleotide-gated channel mutation associated with canine daylight blindness provides insight into a role for the S2 segment tri-Asp motif in channel biogenesis. PLoS One. 2014 Jan;9(2):e88768.   PMCID: Pmc3931646
Ramirez UD, Myachina F, Stith L, Jaffe EK. Docking to large allosteric binding sites on protein surfaces. Adv Exp Med Biol. 2010 Jan;680:481-8.   PMCID: PMC2946403
Makhov P, Golovine K, Uzzo RG, Wuestefeld T, Scoll BJ, Kolenko VM. Transcriptional regulation of the major zinc uptake protein hZip1 in prostate cancer cells. Gene. 2009 Feb 15;431(1-2):39-46.   PMCID: PMC2741159
Min H, Manion FJ, Goralczyk E, Wong YN, Ross E, Beck JR. Integration of prostate cancer clinical data using an ontology. J Biomed Inform. 2009 Dec;42(6):1035-45.   PMCID: PMC2784120
Devarajan K. Nonnegative matrix factorization: an analytical and interpretive tool in computational biology. PLoS Comput Biol. 2008 Jan;4(7):e1000029.   PMCID: PMC2447881
Xu Q, Canutescu AA, Wang G, Shapovalov M, Obradovic Z, Dunbrack RL. Statistical analysis of interface similarity in crystals of homologous proteins. J Mol Biol. 2008 Aug 29;381(2):487-507.   PMCID: PMC2573399
Shapovalov MV, Canutescu AA, Dunbrack RL. BioDownloader: Bioinformatics downloads and updates in a few clicks. Bioinformatics. 2007 May;23(11):1437-9.
Dunbrack RL. Sequence comparison and protein structure prediction. Current opinion in structural biology. 2006 Jun;16(3):374-84.
Daly MB, Ozols RF. The search for predictive patterns in ovarian cancer: proteomics meets bioinformatics. Cancer Cell. 2002 Mar;1(2):111-2.
Dunbrack RL. Homology modeling in biology and medicine. In: Lengauer T, editor. Bioinformatics--from Genomes to Drugs. Weinheim: Wiley-VCH; 2002. p. 145-235.
Crasto CJ, Feng J. Sequence codes for extended conformation: a neighbor-dependent sequence analysis of loops in proteins. Proteins. 2001 Feb 15;42(3):399-413.
Grant JD, Broccoli D, Muquit M, Manion FJ, Tisdall J, Ochs MF. Telometric: a tool providing simplified, reproducible measurements of telomeric DNA from constant field agarose gels. Biotechniques. 2001 Dec;31(6):1314-6, 1318.
Einarson MB, Golemis EA. Encroaching genomics: adapting large-scale science to small academic laboratories. Physiol Genomics. 2000 Apr 27;2(3):85-92.
The above publications are sorted by year, faculty last name, and first author. Click on any highlighted author listed to find all publications attributed to that individual. Click on the publication title to see the abstract. First authors who are faculty are highlighted like this. Last authors who are faculty are highlighted like this. Other authors who are faculty are highlighted like this.

MeSH cloud from publications including the MeSH term Computational Biology

Computational Biology methods genetics chemistry Algorithms Factual Databases Neoplastic Gene Expression Regulation Molecular Models metabolism Proteins Software drug effects Gene Expression Profiling Sequence Alignment Genetic Transcription Secondary Protein Structure Tumor Cell Line Female Prostatic Neoplasms Protein Conformation Base Sequence Neoplasms Protein Databases Protein Binding Research Genomics Genetic Variation Information Storage and Retrieval Molecular Sequence Data pharmacology Statistical Models US Gov't Support-PHS statistics & numerical data Male Protein Structural Homology Human Protein Folding Internet Mutation Genetic Epigenesis Database Management Systems User-Computer Interface analysis Long Noncoding RNA Human Genome Proteome HIV Infections virology Retinal Cone Photoreceptor Cells HIV Protease Inhibitors Terminology as Topic Phenotype Cation Transport Proteins Transcription Initiation Site High-Throughput Nucleotide Sequencing Ovarian Neoplasms Laboratories Semantics Telomere Amino Acid Sequence Homology Drosophila Retinal Degeneration Saccharomyces cerevisiae Porphobilinogen Synthase Mass Screening Zinc Molecular Dynamics Simulation Molecular Cloning Chromosome Mapping Research Design DNA Methylation Enzyme Stability Dimerization Age Factors Artificial Intelligence Reproducibility of Results Dog Diseases Survival Analysis Environmental Pollutants Disease Progression Small Interfering RNA toxicity homology modeling Human Immunodeficiency Virus gag Gene Products Autoradiography Casp Amino Acid Motifs DNA Primers pathology Conserved Sequence Two-Hybrid System Techniques Oligonucleotide Array Sequence Analysis X-Ray Crystallography Immunohistochemistry veterinary Bisphenol A Nucleic Acid Repetitive Sequences Systems Integration DNA methylation Drosophila melanogaster Liver Cyclic Nucleotide-Gated Cation Channels Human Genome Project Energy Metabolism biosynthesis Genetic Complementation Test Amino Acid Sequence Developmental programming physiopathology Markov Chains Allosteric Site HIV Protease Prognosis Phenols United States CpG Islands Crystallization DNA Drug Discovery Transfection Polymerase Chain Reaction Archaea DNA Sequence Analysis Fluorescence Cell Cycle diagnosis Bacteria Protein Sequence Analysis Non-US Gov't Support economics enzymology Genetic Models organization & administration Squamous Cell Carcinoma Gestational Age inhibitors Genetic Promoter Regions Benzhydryl Compounds HIV-1 Magnetic Resonance Spectroscopy standards Biological Tumor Markers Agarose Chromatography Sequence Homology protein structure prediction Genetic Databases Cyclic AMP Response Element-Binding Protein trends Caenorhabditis elegans Sex Factors
Last updated on Tuesday, October 10, 2017