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Publication Listing for the MeSH term Binding Sites. Found 59 abstracts

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Pal RK, Haider K, Kaur D, Flynn W, Xia J, Levy RM, Taran T, Wickstrom L, Kurtzman T, Gallicchio E. A combined treatment of hydration and dynamical effects for the modeling of host-guest binding thermodynamics: the SAMPL5 blinded challenge. Journal of computer-aided molecular design. 2017 Jan;31(1):29-44.   PMCID: PMC5477994
Deng N, Flynn WF, Xia J, Vijayan RS, Zhang B, He P, Mentes A, Gallicchio E, Levy RM. Large scale free energy calculations for blind predictions of protein-ligand binding: the D3R Grand Challenge 2015. Journal of computer-aided molecular design. 2016 Sep;30(9):743-51.
Brusilovsky M, Radinsky O, Cohen L, Yossef R, Shemesh A, Braiman A, Mandelboim O, Campbell KS, Porgador A. Regulation of natural cytotoxicity receptors by heparan sulfate proteoglycans in -cis: A lesson from NKp44. Eur J Immunol. 2015 Apr;45(4):1180-91.   PMCID: PMC4415513
Deng N, Forli S, He P, Perryman A, Wickstrom L, Vijayan RS, Tiefenbrunn T, Stout D, Gallicchio E, Olson AJ, Levy RM. Distinguishing binders from false positives by free energy calculations: fragment screening against the flap site of HIV protease. J Phys Chem B. 2015 Jan 22;119(3):976-88.   PMCID: PMC4306491
Gosselin-Badaroudine P, Moreau A, Delemotte L, Cens T, Collet C, Rousset M, Charnet P, Klein ML, Chahine M. Characterization of the honeybee AmNaV1 channel and tools to assess the toxicity of insecticides. Sci Rep. 2015 Jul 23;5:12475.   PMCID: 4894402
Paudyal S, Alfonso-Prieto M, Carnevale V, Redhu SK, Klein ML, Nicholson AW. Combined computational and experimental analysis of a complex of ribonuclease III and the regulatory macrodomain protein, YmdB. Proteins. 2015 Mar;83(3):459-72.   PMCID: PMC4329070
Maximov PY, Myers CB, Curpan RF, Lewis-Wambi JS, Jordan VC. Structure-function relationships of estrogenic triphenylethylenes related to endoxifen and 4-hydroxytamoxifen. Journal of medicinal chemistry. 2010 Apr 22;53(8):3273-83.   PMCID: PMC2867604
Cheng H, Li J, Fazlieva R, Dai Z, Bu Z, Roder H. Autoinhibitory interactions between the PDZ2 and C-terminal domains in the scaffolding protein NHERF1. Structure. 2009 May 13;17(5):660-9.   PMCID: PMC2688836
Viaud J, Peterson JR. An allosteric kinase inhibitor binds the p21-activated kinase autoregulatory domain covalently. Mol Cancer Ther. 2009 Sep;8(9):2559-65.   PMCID: 2782767
Latypov RF, Maki K, Cheng H, Luck SD, Roder H. Folding mechanism of reduced Cytochrome c: equilibrium and kinetic properties in the presence of carbon monoxide. J Mol Biol. 2008 Nov 07;383(2):437-53.   PMCID: PMC2653224
Srimathi T, Robbins SL, Dubas RL, Chang H, Cheng H, Roder H, Park YC. Mapping of POP1-binding site on pyrin domain of ASC. The Journal of biological chemistry. 2008 May 30;283(22):15390-8.
Pinnola A, Naumova N, Shah M, Tulin AV. Nucleosomal core histones mediate dynamic regulation of poly(ADP-ribose) polymerase 1 protein binding to chromatin and induction of its enzymatic activity. The Journal of biological chemistry. 2007 Nov 02;282(44):32511-9.
Cheng JD, Valianou M, Canutescu AA, Jaffe EK, Lee HO, Wang H, Lai JH, Bachovchin WW, Weiner LM. Abrogation of fibroblast activation protein enzymatic activity attenuates tumor growth. Molecular Cancer Therapeutics. 2005 Mar;4(3):351-60.
Holmqvist PH, Belikov S, Zaret KS, Wrange O. FoxA1 binding to the MMTV LTR modulates chromatin structure and transcription. Exp Cell Res. 2005 Apr;304(2):593-603.
Taganov KD, Cuesta I, Daniel R, Cirillo LA, Katz RA, Zaret KS, Skalka AM. Integrase-specific enhancement and suppression of retroviral DNA integration by compacted chromatin structure in vitro. Journal of Virology. 2004 Jun;78(11):5848-55.
Bao KK, Wang H, Miller JK, Erie DA, Skalka AM, Wong I. Functional oligomeric state of avian sarcoma virus integrase. The Journal of biological chemistry. 2003 Jan 10;278(2):1323-7.
Davis W, Chen ZJ, Ile KE, Tew KD. Reciprocal regulation of expression of the human adenosine 5'-triphosphate binding cassette, sub-family A, transporter 2 (ABCA2) promoter by the early growth response-1 (EGR-1) and Sp-family transcription factors. Nucleic acids research. 2003 Feb;31(3):1097-107.
Pankov R, Cukierman E, Clark K, Matsumoto K, Hahn C, Poulin B, Yamada KM. Specific beta1 integrin site selectively regulates Akt/protein kinase B signaling via local activation of protein phosphatase 2A. The Journal of biological chemistry. 2003 May 16;278(20):18671-81.
Cirillo LA, Lin FR, Cuesta I, Friedman D, Jarnik M, Zaret KS. Opening of compacted chromatin by early developmental transcription factors HNF3 (FoxA) and GATA-4. Mol Cell. 2002 Feb;9(2):279-89.
Jaffe EK, Kervinen J, Martins J, Stauffer F, Neier R, Wlodawer A, Zdanov A. Species-specific inhibition of porphobilinogen synthase by 4-oxosebacic acid. The Journal of biological chemistry. 2002 May 31;277(22):19792-9.
The above publications are sorted by year, faculty last name, and first author. Click on any highlighted author listed to find all publications attributed to that individual. Click on the publication title to see the abstract. First authors who are faculty are highlighted like this. Last authors who are faculty are highlighted like this. Other authors who are faculty are highlighted like this.

MeSH cloud from publications including the MeSH term Binding Sites

Binding Sites metabolism chemistry Protein Binding genetics Thermodynamics US Gov't Support-PHS physiology Molecular Sequence Data DNA-Binding Proteins Molecular Models Amino Acid Sequence Molecular Docking Simulation Non-US Gov't Support Protein Conformation Ligands Cell Line Mice Chromatin Transcription Factors Kinetics Nucleosomes pharmacology Tumor Cell Line Base Sequence Animal biosynthesis Nuclear Proteins drug effects Human Promoter Regions (Genetics) Genetic Transcription Drug Design Transfection Structure-Activity Relationship Gene Silencing Biomolecular Nuclear Magnetic Resonance Non-US Gov't Research Support Fluorescence Microscopy enzymology methods Time Factors ph [Physiology] ch [Chemistry] Complementary DNA Catalysis Carrier Proteins Cell Proliferation Virus Integration Flow Cytometry X-Ray Crystallography Neoplasms Tertiary Protein Structure en [Enzymology] Female Amino Acid Motifs ultrastructure Avian Sarcoma Viruses me [Metabolism] Genetically Modified Animals Sampl5 Antineoplastic Agents Protein Folding derivatives Transcription Initiation Site Fluorescence Spectrometry Apoptosis Debye-Huckel pd [Pharmacology] Roc Biological) 0 (Tumor Markers Drosophila Chemical Models 56-45-1 (Serine) Precipitin Tests Porphobilinogen Synthase Proto-Oncogene Proteins Cytoplasm Molecular Dynamics Simulation Hepatocyte Nuclear Factor 3-alpha Agbnp2 Binding free energy Mutation Estrogen Antagonists Apoptosis Regulatory Proteins Enzyme Activation Phosphoprotein Phosphatase PDZ Domains Neurofibromin 1 NK cell activation Endoderm Western Blotting Hydration Site Analysis (HSA) CD29 Antigens Sodium Channel Blockers Rats Atomic Force Microscopy NKp44 toxicity Integrases Fibroblasts Recombinant Fusion Proteins ADP-ribose Solvents Bedam Breast Neoplasms NF-kappa B Caspase 1 Hydroxyl Radical Poly(ADP-ribose) Polymerases Secondary Protein Structure Catalytic Domain Gc2015 Heparan sulfate embryology Serine Endopeptidases Immunohistochemistry Site-Directed Mutagenesis Trans-Activation (Genetics) Developmental Gene Expression Regulation Water US Gov't Research Support-PHS Escherichia coli Proteins Biological Models Macromolecular Systems Histones Drosophila melanogaster Liver Prospective Studies Circular Dichroism Complementary) 0 (DNA Mitogen-Activated Protein Kinases Oocytes Preclinical Drug Evaluation macrodomain Viral DNA Phosphoproteins Horses Sodium-Hydrogen Antiporter Stereoisomerism Phosphorylation Xenopus Allosteric Regulation ge [Genetics] HIV Protease double-stranded RNA Multiprotein Complexes Peas ATP-Binding Cassette Transporters Cytochromes c
Last updated on Friday, February 02, 2018