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Publication Listing for the MeSH term Amino Acid Sequence. Found 112 abstracts

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Haldane A, Levy RM. Influence of multiple-sequence-alignment depth on Potts statistical models of protein covariation. Physical review E. 2019 Mar;99(3-1):032405.   PMCID: PMC6508952
Shapovalov M, Vucetic S, Dunbrack RL. A new clustering and nomenclature for beta turns derived from high-resolution protein structures. PLoS computational biology. 2019 Mar;15(3):e1006844.   PMCID: PMC6424458
Adolf-Bryfogle J, Kalyuzhniy O, Kubitz M, Weitzner BD, Hu X, Adachi Y, Schief WR, Dunbrack RL. RosettaAntibodyDesign (RAbD): A general framework for computational antibody design. PLoS computational biology. 2018 Apr 27;14(4):e1006112.   PMCID: PMC5942852
Rusanov T, Kent T, Saeed M, Hoang TM, Thomas C, Rice CM, Pomerantz RT. Identification of a Small Interface between the Methyltransferase and RNA Polymerase of NS5 that is Essential for Zika Virus Replication. Sci Rep. 2018 Nov 26;8(1):17384.   PMCID: PMC6255901
Weitzner BD, Jeliazkov JR, Lyskov S, Marze N, Kuroda D, Frick R, Adolf-Bryfogle J, Biswas N, Dunbrack RL, Gray JJ. Modeling and docking of antibody structures with Rosetta. Nature protocols. 2017 Feb;12(2):401-16.   PMCID: PMC5739521
Zhou G, Pantelopulos GA, Mukherjee S, Voelz VA. Bridging Microscopic and Macroscopic Mechanisms of p53-MDM2 Binding with Kinetic Network Models. Biophysical journal. 2017 Aug 22;113(4):785-93.   PMCID: PMC5567610
Wan H, Zhou G, Voelz VA. A Maximum-Caliber Approach to Predicting Perturbed Folding Kinetics Due to Mutations. J Chem Theory Comput. 2016 Dec 13;12(12):5768-76.
Gosselin-Badaroudine P, Moreau A, Delemotte L, Cens T, Collet C, Rousset M, Charnet P, Klein ML, Chahine M. Characterization of the honeybee AmNaV1 channel and tools to assess the toxicity of insecticides. Sci Rep. 2015 Jul 23;5:12475.   PMCID: 4894402
Lecht S, Chiaverelli RA, Gerstenhaber J, Calvete JJ, Lazarovici P, Casewell NR, Harrison R, Lelkes PI, Marcinkiewicz C. Anti-angiogenic activities of snake venom CRISP isolated from Echis carinatus sochureki. Biochimica et biophysica acta. 2015 Jun;1850(6):1169-79.
Moreau A, Gosselin-Badaroudine P, Delemotte L, Klein ML, Chahine M. Gating pore currents are defects in common with two Nav1.5 mutations in patients with mixed arrhythmias and dilated cardiomyopathy. The Journal of general physiology. 2015 Feb;145(2):93-106.   PMCID: PMC4306709
Najjar M, Suebsuwong C, Ray S, Thapa R, Maki J, Nogusa S, Shah S, Saleh D, Gough P, Bertin J, Yuan J, Balachandran S, Cuny G, Degterev A. Structure guided design of potent and selective ponatinib-based hybrid inhibitors for RIPK1. Cell Reports. 2015 Mar 24;10(11):1850-60.   PMCID: 4494889
Paudyal S, Alfonso-Prieto M, Carnevale V, Redhu SK, Klein ML, Nicholson AW. Combined computational and experimental analysis of a complex of ribonuclease III and the regulatory macrodomain protein, YmdB. Proteins. 2015 Mar;83(3):459-72.   PMCID: PMC4329070
Tanaka N, Dutrow EV, Miyadera K, Delemotte L, MacDermaid CM, Reinstein SL, Crumley WR, Dixon CJ, Casal ML, Klein ML, Aguirre GD, Tanaka JC, Guziewicz KE. Canine CNGA3 Gene Mutations Provide Novel Insights into Human Achromatopsia-Associated Channelopathies and Treatment. PLoS One. 2015 Jan;10(9):e0138943.   PMCID: 4583268
Vijayan RS, He P, Modi V, Duong-Ly KC, Ma HC, Peterson JR, Dunbrack RL, Levy RM. Conformational Analysis of the DFG-Out Kinase Motif and Biochemical Profiling of Structurally Validated Type II Inhibitors. Journal of medicinal chemistry. 2015 Jan;58(1):466-79.   PMCID: 4326797
Zhang S, Moussodia RO, Vertesy S, Andre S, Klein ML, Gabius HJ, Percec V. Unraveling functional significance of natural variations of a human galectin by glycodendrimersomes with programmable glycan surface. Proc Natl Acad Sci U S A. 2015 May 05;112(18):5585-90.   PMCID: PMC4426414
Tanaka N, Delemotte L, Klein ML, Komaromy AM, Tanaka JC. A cyclic nucleotide-gated channel mutation associated with canine daylight blindness provides insight into a role for the S2 segment tri-Asp motif in channel biogenesis. PLoS One. 2014 Jan;9(2):e88768.   PMCID: Pmc3931646
Zhang H, Chang YC, Brennan ML, Wu J. The structure of Rap1 in complex with RIAM reveals specificity determinants and recruitment mechanism. J Mol Cell Biol. 2014 Apr;6(2):128-39.   PMCID: 4817127
Kuo YM, Andrews AJ. Quantitating the specificity and selectivity of Gcn5-mediated acetylation of histone H3. PLoS One. 2013 Jan;8(2):e54896.   PMCID: PMC3578832
Jaffe EK, Lawrence SH. Allostery and the dynamic oligomerization of porphobilinogen synthase. Archives of biochemistry and biophysics. 2012 Mar 15;519(2):144-53.   PMCID: PMC3291741
North B, Lehmann A, Dunbrack RL. A new clustering of antibody CDR loop conformations. J Mol Biol. 2011 Feb 18;406(2):228-56.   PMCID: PMC3065967
The above publications are sorted by year, faculty last name, and first author. Click on any highlighted author listed to find all publications attributed to that individual. Click on the publication title to see the abstract. First authors who are faculty are highlighted like this. Last authors who are faculty are highlighted like this. Other authors who are faculty are highlighted like this.

MeSH cloud from publications including the MeSH term Amino Acid Sequence

Amino Acid Sequence chemistry metabolism Molecular Sequence Data Protein Conformation genetics Protein Binding Mutation Molecular Models Molecular Dynamics Simulation Molecular Docking Simulation drug effects Kinetics Mice Sequence Alignment Complementarity Determining Regions immunology Substrate Specificity Ion Channel Gating methods Algorithms Reproducibility of Results pharmacology Immunoglobulin Variable Region Tumor Cell Line pathology Amino Acids Genetic Models Protein Kinase Inhibitors Proteins Computational Biology Binding Sites Dogs veterinary Antibodies Allosteric Regulation Thermodynamics HEK293 Cells Tertiary Protein Structure Markov Chains Missense Mutation Cell Membrane Amino Acid Motifs Peptides Cyclic Nucleotide-Gated Cation Channels Computer Simulation self-assembly Acetylation Amino Acid Sequence Homology Riam Retinal Degeneration Lysine alpha-Helical Protein Conformation Porphobilinogen Synthase antagonists & Immunoglobulin Heavy Chains Molecular Cloning Internet Signal Transducing Adaptor Proteins Glioma Viper Venoms Angiogenesis Inhibitors Channelopathies Alternative Splicing Enzyme Stability adhesion Dog Diseases Telomere-Binding Proteins Antigens Sodium Channel Blockers p300-CBP Transcription Factors Biocatalysis Cell Communication toxicity ADP-ribose glycobiology Migration Monte Carlo Method DNA Primers Protein Multimerization Small Molecule Libraries Secondary Protein Structure X-Ray Crystallography inside-out signaling Immunohistochemistry purification Angiogenesis Zika Virus Rap1 Pyridazines Cell Adhesion Escherichia coli Proteins Color Vision Defects Carrier Proteins membrane mimic Autoimmune Diseases Histones ras Proteins Protein Databases Imidazoles Ra-ph biosynthesis macrodomain Crisp Jurkat Cells Cardiac Arrhythmias Allosteric Site statistics & numerical data isolation & double-stranded RNA Protein Structural Homology Drug Design integrin signaling Quail Protein Domains Ligands Bees Mass Spectrometry Tryptophan Insecticides Voltage-Gated Sodium Channels Antigen-Antibody Complex Endothelial Cells Cell proliferation Molecular Structure DNA Sequence Analysis Zika Virus Infection Fluorescence diagnosis Ribonuclease III Human Umbilical Vein Endothelial Cells Nucleosomes Dilated Cardiomyopathy Drug Dose-Response Relationship inhibitors Acetyl Coenzyme A Surface Properties agglutination Membrane Proteins Methyltransferases NAV15 Voltage-Gated Sodium Channel ultrastructure Pathologic Neovascularization Cluster Analysis Chorioallantoic Membrane Magnetic Resonance Spectroscopy crystal structure RNA Replicase Integrins Sequence Homology
Last updated on Friday, January 03, 2020