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Publication Listing for the MeSH term Algorithms. Found 44 abstracts

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Haldane A, Levy RM. Influence of multiple-sequence-alignment depth on Potts statistical models of protein covariation. Physical review E. 2019 Mar;99(3-1):032405.   PMCID: PMC6508952
Liu L, Sanderford MD, Patel R, Chandrashekar P, Gibson G, Kumar S. Biological relevance of computationally predicted pathogenicity of noncoding variants. Nat Commun. 2019 Jan 18;10(1):330.   PMCID: PMC6338804
Shapovalov M, Vucetic S, Dunbrack RL. A new clustering and nomenclature for beta turns derived from high-resolution protein structures. PLoS computational biology. 2019 Mar;15(3):e1006844.   PMCID: PMC6424458
Skates SJ, Greene MH, Buys SS, Mai PL, Brown PH, Piedmonte M, Rodriguez GC, Schorge JO, Sherman M, Daly MB, Rutherford TJ, Brewster WR, O'Malley DM, Partridge EE, Boggess J, Drescher CW, Isaacs C, Berchuck A, Domchek SM, Davidson SA, Edwards RP, Elg SA, Wakeley K, Phillips KA, Armstrong DK, Horowitz IR, Fabian CJ, Walker J, Sluss PM, Welch WR, Minasian L, Horick N, Kasten CH, Nayfield S, Alberts DS, Finkelstein DM, Lu K. Early Detection of Ovarian Cancer using the Risk of Ovarian Cancer Algorithm with Frequent CA125 Testing in Women at Increased Familial Risk - Combined Results from Two Screening Trials. Clin Cancer Res. 2017 Jul 15;23(14):3628-37.   PMCID: PMC5726402
Ursu O, Gosline SJ, Beeharry N, Fink L, Bhattacharjee V, Huang SC, Zhou Y, Yen T, Fraenkel E. Network modeling of kinase inhibitor polypharmacology reveals pathways targeted in chemical screens. PLoS One. 2017 Oct;12(10):e0185650.   PMCID: PMC5638242
Vachani A, Wong YN, Israelite J, Mitra N, Hin S, Yang L, Smith-McLallen A, Armstrong K, Groeneveld PW, Epstein AJ. Validation of Molecular Pathology Codes for the Identification of Mutational Testing in Lung and Colon Cancer. Med Care. 2017 Dec;55(12):e131-e136.
Devarajan K, Cheung VC. A Quasi-Likelihood Approach to Nonnegative Matrix Factorization. Neural Comput. 2016 Aug;28(8):1663-93.   PMCID: PMC5549860
Modi V, Xu Q, Adhikari S, Dunbrack RL. Assessment of template-based modeling of protein structure in CASP11. Proteins. 2016 Sep;84 Suppl 1:200-20.   PMCID: PMC5030193
Wang M, Devarajan K, Singal AG, Marrero JA, Dai J, Feng Z, Rinaudo JA, Srivastava S, Evans A, Hann HW, Lai Y, Yang H, Block TM, Mehta A. The Doylestown Algorithm: A Test to Improve the Performance of AFP in the Detection of Hepatocellular Carcinoma. Cancer prevention research (Philadelphia, Pa). 2016 Feb;9(2):172-9.   PMCID: PMC4740237
Austin SR, Wong YN, Uzzo RG, Beck JR, Egleston BL. Why Summary Comorbidity Measures Such As the Charlson Comorbidity Index and Elixhauser Score Work. Med Care. 2015 Sep;53(9):e65-72.   PMCID: 3818341
Carlier T, Willowson KP, Fourkal E, Bailey DL, Doss M, Conti M. (90)Y -PET imaging: Exploring limitations and accuracy under conditions of low counts and high random fraction. Med Phys. 2015 Jul;42(7):4295-309.
Masica DL, Li S, Douville C, Manola J, Ferris RL, Burtness B, Forastiere AA, Koch WM, Chung CH, Karchin R. Predicting survival in head and neck squamous cell carcinoma from TP53 mutation. Hum Genet. 2015 May;134(5):497-507.   PMCID: 4324386
Zelenetz AD, Gordon LI, Wierda WG, Abramson JS, Advani RH, Andreadis CB, Bartlett N, Byrd JC, Czuczman MS, Fayad LE, Fisher RI, Glenn MJ, Habermann TM, Harris NL, Hoppe RT, Horwitz SM, Kelsey CR, Kim YH, Krivacic S, LaCasce AS, Nademanee A, Porcu P, Press O, Rabinovitch R, Reddy N, Reid E, Saad AA, Sokol L, Swinnen LJ, Tsien C, Vose JM, Wilson L, Yahalom J, Zafar N, Dwyer M, Sundar H. Chronic lymphocytic leukemia/small lymphocytic lymphoma, version 1.2015. J Natl Compr Canc Netw. 2015 Mar;13(3):326-62.   PMCID: PMC4841457
Zhang BW, Xia J, Tan Z, Levy RM. A Stochastic Solution to the Unbinned WHAM Equations. The journal of physical chemistry letters. 2015 Oct;6(19):3834-40.   PMCID: PMC4894662
Chibani O, Ma CM. HDRMC, an accelerated Monte Carlo dose calculator for high dose rate brachytherapy with CT-compatible applicators. Med Phys. 2014 May;41(5):051712.
Karlan BY, Thorpe J, Watabayashi K, Drescher CW, Palomares M, Daly MB, Paley P, Hillard P, Andersen MR, Anderson G, Drapkin R, Urban N. Use of CA125 and HE4 serum markers to predict ovarian cancer in elevated-risk women. Cancer Epidemiol Biomarkers Prev. 2014 Jul;23(7):1383-93.   PMCID: 4082470
Wang L, Feigenberg S, Fan J, Jin L, Turaka A, Chen L, Ma CM. Target repositional accuracy and PTV margin verification using three-dimensional cone-beam computed tomography (CBCT) in stereotactic body radiotherapy (SBRT) of lung cancers. J Appl Clin Med Phys. 2012 Jan;13(2):3708.   PMCID: not NIH funded
North B, Lehmann A, Dunbrack RL. A new clustering of antibody CDR loop conformations. J Mol Biol. 2011 Feb 18;406(2):228-56.   PMCID: PMC3065967
Campbell SC, Faraday M, Uzzo RG. Small renal mass. The New England journal of medicine. 2010 Jun 17;362(24):2334; author reply 2334-5.
Egleston BL, Scharfstein DO, MacKenzie E. On estimation of the survivor average causal effect in observational studies when important confounders are missing due to death. Biometrics. 2009 Jun;65(2):497-504.   PMCID: PMC2700847
The above publications are sorted by year, faculty last name, and first author. Click on any highlighted author listed to find all publications attributed to that individual. Click on the publication title to see the abstract. First authors who are faculty are highlighted like this. Last authors who are faculty are highlighted like this. Other authors who are faculty are highlighted like this.

MeSH cloud from publications including the MeSH term Algorithms

Algorithms Statistical Models methods Female pathology genetics Neoplasm Staging Proteins chemistry Prognosis surgery Computer Simulation Mutation diagnosis Protein Conformation epidemiology Amino Acid Sequence Computational Biology blood Aged ROC Curve Photons statistics & numerical data Lung Neoplasms Ovarian Neoplasms Kidney Neoplasms Early Detection of Cancer Computer-Assisted Radiotherapy Planning Water Tumor Biomarkers CA-125 Antigen Middle Aged Survival Analysis Reproducibility of Results Biological Models Molecular Models analysis Sensitivity and Specificity metabolism Male Membrane Proteins Comorbidity Amino Acids Software Health Services Research Cohort Studies Epithelial-Mesenchymal Transition Colorectal Neoplasms Meta-Analysis as Topic Confounding Factors (Epidemiology) Terminology as Topic Protein Folding Esophageal Neoplasms Insurance Claim Review Immunoglobulin Heavy Chains Cone-Beam Computed Tomography Internet Uterine Cervical Neoplasms Immunoenzyme Techniques Adult Multimodal Imaging Disease Progression Disease 80 and over Aged Imaging Phantoms homology modeling Complementarity Determining Regions Casp radiography Monte Carlo Method Breast Neoplasms DNA Repair Four-Dimensional Computed Tomography Local Neoplasm Recurrence Secondary Protein Structure Untranslated RNA SEER Program Machine Learning Molecular Pathology Positron-Emission Tomography Epidemiologic Research Design Pancreatic Neoplasms Liver Neoplasms Incidence Mammals Liver Cirrhosis Registries Molecular Evolution Yttrium Radioisotopes Follow-Up Studies Lymphocytic Leukemia-Chronic-B-Cell Drosophila melanogaster Iridium Radioisotopes Spinal Cord therapy Protein Databases etiology Medicare Uwham drug effects alpha-Fetoproteins Radiotherapy Dosage stochastic reweighting physiopathology free energy Sample Size Statistical Data Interpretation X-Ray Microtomography Thermodynamics Markov Chains Hepatocellular Carcinoma Practice Guidelines as Topic Protein Structural Homology Biometry Case-Control Studies Predictive Value of Tests United States radiation effects Protein Kinase Inhibitors instrumentation radiotherapy Archaea BRCA1 Genes Bacteria Nephrectomy parallel simulations Genome-Wide Association Study Genetic Models Genetic Transcription Squamous Cell Carcinoma Germ-Line Mutation Linear Models Genetic Predisposition to Disease Risk Factors Antibodies pharmacology Likelihood Functions Cluster Analysis pharmacokinetics Glandular and Epithelial Neoplasms protein structure prediction Stochastic Processes Signal Transduction Genetic Epigenesis Genetic Databases Disease Management drug therapy Kidney Survival Rate Deoxycytidine
Last updated on Friday, July 10, 2020